PXD058337

PXD058337 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Spectral Libraries in proteomics
Description	evaluated approaches for building a spectral library in plasma proteomics on a timsTOF HT system. Furthermore, the relationship between measurement time, library depth and number of protein and peptide identification for semi-high throughput plasma proteomics applications was assessed.
HostingRepository	PRIDE
AnnounceDate	2025-11-17
AnnouncementXML	Submission_2025-11-16_21:35:22.354.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Pieter Langerhorst
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: NEWT:9606;
ModificationList	acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	timsTOF HT

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2024-11-27 09:16:08	ID requested
⏵ 1	2025-11-16 21:35:23	announced

Publication List

10.1021/acs.jproteome.5c00637;
Smit ER, van der Zwaan C, Groten SA, van den Biggelaar M, Hoogendijk AJ, Langerhorst P, Considering Measurement Time and Depth in diaPASEF Plasma Proteomics. J Proteome Res, 24(11):5904-5910(2025) [pubmed]

10.1021/acs.jproteome.5c00637;

Smit ER, van der Zwaan C, Groten SA, van den Biggelaar M, Hoogendijk AJ, Langerhorst P, Considering Measurement Time and Depth in diaPASEF Plasma Proteomics. J Proteome Res, 24(11):5904-5910(2025) [pubmed]

Keyword List

submitter keyword: timsTOF HT, Plasma Proteomics,Spectral library, Data independent acquisition

submitter keyword: timsTOF HT, Plasma Proteomics,Spectral library, Data independent acquisition

Contact List

Pieter Langerhorst
contact affiliation	Sanquin Research
contact email	p.langerhorst@sanquin.nl
lab head
Pieter Langerhorst
contact affiliation	Sanquin Research
contact email	p.langerhorst@sanquin.nl
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/11/PXD058337
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/11/PXD058337

PRIDE project URI

Repository Record List

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