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PXD057670

PXD057670 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleP4PP: an universal shotgun proteomics data analysis pipeline for virus identification, samples of DGA CBRN Defence Center
DescriptionHumans can be infected by a wide variety of virus species. To detect these different viruses, a data analysis approach for shotgun proteomic data was developed. For this proteome for pandemic preparedness (P4PP) pipeline, a database (P4PPv01) and a web application (P4PP) were constructed. The P4PP pipeline enables the identification of 1896 virus species from the 32 virus families in which at least one human-infectious virus is described. To evaluate the developed analysis pipeline the supernatant of Vero Cell cultures of three Togaviridae (Rio Negro virus, Sindbis virus and Pixuna virus) and a negative sample were analyzed.
HostingRepositoryPRIDE
AnnounceDate2025-06-06
AnnouncementXMLSubmission_2025-06-06_04:58:48.006.xml
DigitalObjectIdentifierhttps://dx.doi.org/10.6019/PXD057670
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportSupported dataset by repository
PrimarySubmitterMarine Eschlimann
SpeciesList scientific name: Cercopithecus aethiops (Green monkey) (Grivet); NCBI TaxID: 9534; scientific name: Rio Negro virus; NCBI TaxID: 332097; scientific name: Sindbis virus; NCBI TaxID: 11034; scientific name: Pixuna virus; NCBI TaxID: 60876;
ModificationListmonohydroxylated residue
InstrumentQ Exactive
Dataset History
RevisionDatetimeStatusChangeLog Entry
02024-11-08 06:49:23ID requested
12025-06-06 04:58:48announced
Publication List
10.6019/PXD057670;
Keyword List
submitter keyword: Virus, identification, LC-MS/MS
Contact List
Vincent Ramisse
contact affiliationDGA CBRN Defence Center, Vert-le-Petit, France
contact emailvincent.ramisse@intradef.gouv.fr
lab head
Marine Eschlimann
contact affiliationDGA CBRN Defence Center
contact emailmarine.eschlimann@intradef.gouv.fr
dataset submitter
Full Dataset Link List
Dataset FTP location
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PRIDE project URI
Repository Record List
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