PXD057670

PXD057670 is an original dataset announced via ProteomeXchange.

Title	P4PP: an universal shotgun proteomics data analysis pipeline for virus identification, samples of DGA CBRN Defence Center
Description	Humans can be infected by a wide variety of virus species. To detect these different viruses, a data analysis approach for shotgun proteomic data was developed. For this proteome for pandemic preparedness (P4PP) pipeline, a database (P4PPv01) and a web application (P4PP) were constructed. The P4PP pipeline enables the identification of 1896 virus species from the 32 virus families in which at least one human-infectious virus is described. To evaluate the developed analysis pipeline the supernatant of Vero Cell cultures of three Togaviridae (Rio Negro virus, Sindbis virus and Pixuna virus) and a negative sample were analyzed.
HostingRepository	PRIDE
AnnounceDate	2025-06-06
AnnouncementXML	Submission_2025-06-06_04:58:48.006.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD057670
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Marine Eschlimann
SpeciesList	scientific name: Cercopithecus aethiops (Green monkey) (Grivet); NCBI TaxID: 9534; scientific name: Rio Negro virus; NCBI TaxID: 332097; scientific name: Sindbis virus; NCBI TaxID: 11034; scientific name: Pixuna virus; NCBI TaxID: 60876;
ModificationList	monohydroxylated residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2024-11-08 06:49:23	ID requested
⏵ 1	2025-06-06 04:58:48	announced

10.6019/PXD057670;

submitter keyword: Virus, identification, LC-MS/MS

Vincent Ramisse
contact affiliation	DGA CBRN Defence Center, Vert-le-Petit, France
contact email	vincent.ramisse@intradef.gouv.fr
lab head
Marine Eschlimann
contact affiliation	DGA CBRN Defence Center
contact email	marine.eschlimann@intradef.gouv.fr
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/06/PXD057670

PRIDE project URI

• PRIDE
  1. PXD057670
     1. Label: PRIDE project
     2. Name: P4PP: an universal shotgun proteomics data analysis pipeline for virus identification, samples of DGA CBRN Defence Center