PXD057342

PXD057342 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Peptide mapping and intact mass analysis of RBD protein from a SARS-CoV-2 omicron variant (RBDom)
Description	RBD protein from the SARS-CoV-2 omicron variant (RBDom) was produced in Komagataella phaffii. Peptide mapping and intact mass analysis of RBDom were performed by LC/MS. Proteins were identified using BioPharma Finder software.
HostingRepository	jPOST
AnnounceDate	2024-10-30
AnnouncementXML	Submission_2025-01-06_17:54:51.211.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Noritaka Hashii
SpeciesList	scientific name: Komagataella phaffii; NCBI TaxID: 460519;
ModificationList	S-carboxymethyl-L-cysteine; L-methionine sulfoxide; monohydroxylated tryptophan; 3'-hydroxylation of L-tyrosine to L-3',4'-dihydroxyphenylalanine; deamidated L-asparagine; deamidated L-glutamine; unknown modification
Instrument	Orbitrap Fusion Lumos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2024-10-30 00:18:55	ID requested
1	2024-10-30 00:18:59	announced
⏵ 2	2025-01-06 17:54:52	announced	2025-01-07: Updated PubMed.

Publication List

Tominaga M, Shima Y, Nozaki K, Ito Y, Someda M, Shoya Y, Hashii N, Obata C, Matsumoto-Kitano M, Suematsu K, Matsukawa T, Hosoya K, Hashiba N, Kondo A, Ishii J, Designing strong inducible synthetic promoters in yeasts. Nat Commun, 15(1):10653(2024) [pubmed]

Tominaga M, Shima Y, Nozaki K, Ito Y, Someda M, Shoya Y, Hashii N, Obata C, Matsumoto-Kitano M, Suematsu K, Matsukawa T, Hosoya K, Hashiba N, Kondo A, Ishii J, Designing strong inducible synthetic promoters in yeasts. Nat Commun, 15(1):10653(2024) [pubmed]

Keyword List

submitter keyword: RBD, omicron, peptide mapping, intact mass analysis

submitter keyword: RBD, omicron, peptide mapping, intact mass analysis

Contact List

Noritaka Hashii
lab head
Noritaka Hashii
contact affiliation	National Institute of Health Sciences
dataset submitter

Full Dataset Link List

jPOST dataset URI
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jPOST dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.jpostdb.org/JPST003442/