PXD057301

PXD057301 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Proximity proteomics of phagophore-associated proteins using APEX2-LC3B in VPS37A KO U-2 OS cells
Description	We utilized an APEX2-mediated proximity biotinylation approach to label proteins on LC3-positive membranes that accumulate in VPS37A-knockout (KO) U-2 OS cells. AP, APEX2 control; WT, APEX2-LC3B.
HostingRepository	PRIDE
AnnounceDate	2024-12-03
AnnouncementXML	Submission_2024-12-03_06:59:27.721.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD057301
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Yoshinori Takahashi
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	autoflex

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2024-10-29 10:33:32	ID requested
⏵ 1	2024-12-03 06:59:28	announced

Publication List

10.6019/PXD057301;
10.1016/j.celrep.2024.115016;
Hamamoto K, Liang X, Ito A, Lanza M, Bui V, Zhang J, Opozda DM, Hattori T, Chen L, Haddock D, Imamura F, Wang HG, Takahashi Y, Unveiling the physiological impact of ESCRT-dependent autophagosome closure by targeting the VPS37A ubiquitin E2 variant-like domain. Cell Rep, 43(12):115016(2024) [pubmed]

10.6019/PXD057301;

10.1016/j.celrep.2024.115016;

Hamamoto K, Liang X, Ito A, Lanza M, Bui V, Zhang J, Opozda DM, Hattori T, Chen L, Haddock D, Imamura F, Wang HG, Takahashi Y, Unveiling the physiological impact of ESCRT-dependent autophagosome closure by targeting the VPS37A ubiquitin E2 variant-like domain. Cell Rep, 43(12):115016(2024) [pubmed]

Keyword List

submitter keyword: Human, VPS37A KO U-2 OS cells, Autophagosomal membrane, Phagophore, APEX2-LC3B

submitter keyword: Human, VPS37A KO U-2 OS cells, Autophagosomal membrane, Phagophore, APEX2-LC3B

Contact List

Yoshinori Takahashi
contact affiliation	Division of Pediatric Hematology and Oncology, Department of Pediatrics, The Pennsylvania State University College of Medicine
contact email	ytakahashi@pennstatehealth.psu.edu
lab head
Yoshinori Takahashi
contact affiliation	The Pennsylvania State University
contact email	ytakahashi@pennstatehealth.psu.edu
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/12/PXD057301
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/12/PXD057301

PRIDE project URI

Repository Record List

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