PXD056647

PXD056647 is an original dataset announced via ProteomeXchange.

Title	Label-free quantitative proteomic analysis reveals the physiological and biochemical responses of Arabidopsis thaliana to cinnamon essential oil
Description	The increasing use of synthetic chemical herbicides has resulted in environmental, human and animal health issues. This has also led to the development of herbicide resistance in weed populations. The use of essential oils (EOs) can contribute to the development of effective, eco-friendly and nature-based alternatives to these chemical products due to their phytotoxicity and multisite action. Our study aimed to evaluate the proteomic response of Arabidopsis thaliana (A. thaliana) leaves to application of a cinnamon essential oil (CEO) emulsion. The results showed that the application of CEO emulsion at a concentration of 6% severely impacted the proteomic profile of A. thaliana, especially for membrane proteins and those involved in the photosynthesis process. In fact, the analysis of principal components and the regression analysis with limma revealed significant differences in protein expression between nontreated leaves and those sprayed with CEO. Interestingly, 40 proteins were identified and listed as the most differentially accumulated proteins in the leaves of A. thaliana. It decreased the expression of all the proteins associated with catabolism and anabolism processes while simultaneously increasing the expression level of proteins involved in the response to oxidative stress. Overall, these findings allowed us to obtain a global view of the proteome response to CEO, opening promising perspectives for the development of natural herbicides, especially given the low probability of developing resistant weed populations.
HostingRepository	PRIDE
AnnounceDate	2025-05-07
AnnouncementXML	Submission_2025-05-07_04:17:39.299.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD056647
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Sofiene Ben kaab
SpeciesList	scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: 3702;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Synapt MS

Revision	Datetime	Status	ChangeLog Entry
0	2024-10-09 02:59:14	ID requested
⏵ 1	2025-05-07 04:17:40	announced

10.6019/PXD056647;

Kaab SB, Martin M, Degand H, Foncoux B, Morsomme P, Jijakli MH, Label free quantitative proteomic analysis reveals the physiological and biochemical responses of Arabidopsis thaliana to cinnamon essential oil. Sci Rep, 15(1):6156(2025) [pubmed]

10.1038/s41598-025-89368-4;

submitter keyword: HDMSE,Essential oils

weed populations

Botanical herbicides

Arabidopsis thaliana

Differentially accumulated proteins, Synapt G2-Si

Sofiene Ben Kaab
contact affiliation	1Integrated and Urban Plant Pathology Laboratory, University of Liège, Gembloux Agro-Bio Tech, 2 Passage des Déportés 5030 Gembloux, Belgium
contact email	sofiene.benkaab@uliege.be
lab head
Sofiene Ben kaab
contact affiliation	University of liege
contact email	sofiene.benkaab@uliege.be
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/05/PXD056647

PRIDE project URI

• PRIDE
  1. PXD056647
     1. Label: PRIDE project
     2. Name: Label-free quantitative proteomic analysis reveals the physiological and biochemical responses of Arabidopsis thaliana to cinnamon essential oil