PXD056609 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | MSI-VISUAL: New visualization methods for Mass Spectrometry Imaging and tools for interactive mapping and exploration of m/z values |
Description | Mass spectrometry imaging dataset from fresh frozen mouse brain sections for development of a novel spatial segmentation computational pipeline. |
HostingRepository | PRIDE |
AnnounceDate | 2025-03-14 |
AnnouncementXML | Submission_2025-03-13_22:02:19.618.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Jens Pahnke |
SpeciesList | scientific name: Mus musculus (Mouse); NCBI TaxID: 10090; |
ModificationList | No PTMs are included in the dataset |
Instrument | timsTOF fleX |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2024-10-08 05:12:44 | ID requested | |
⏵ 1 | 2025-03-13 22:02:20 | announced | |
Publication List
Keyword List
submitter keyword: clustering,mass spectrometry imaging, amyloid-beta, Kmeans, saliency optimization, Alzheimer, brain, non-negative matrix factorization, segmentation, percentile ratio, UMAP |
Contact List
Jens Pahnke |
contact affiliation | University of Oslo, www.pahnkelab.eu |
contact email | jens.pahnke@gmail.com |
lab head | |
Jens Pahnke |
contact affiliation | University of Oslo, University of Lübeck, University of Latvia, Tel Aviv University, www.pahnkelab.eu |
contact email | jens.pahnke@gmail.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/03/PXD056609 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD056609
- Label: PRIDE project
- Name: MSI-VISUAL: New visualization methods for Mass Spectrometry Imaging and tools for interactive mapping and exploration of m/z values