PXD056609

PXD056609 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	MSI-VISUAL: New visualization methods for Mass Spectrometry Imaging and tools for interactive mapping and exploration of m/z values
Description	Mass spectrometry imaging dataset from fresh frozen mouse brain sections for development of a novel spatial segmentation computational pipeline.
HostingRepository	PRIDE
AnnounceDate	2025-03-14
AnnouncementXML	Submission_2025-03-13_22:02:19.618.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Jens Pahnke
SpeciesList	scientific name: Mus musculus (Mouse); NCBI TaxID: 10090;
ModificationList	No PTMs are included in the dataset
Instrument	timsTOF fleX

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2024-10-08 05:12:44	ID requested
⏵ 1	2025-03-13 22:02:20	announced

Publication List

10.1101/2025.03.09.642213;

10.1101/2025.03.09.642213;

Keyword List

submitter keyword: clustering,mass spectrometry imaging, amyloid-beta, Kmeans, saliency optimization, Alzheimer, brain, non-negative matrix factorization, segmentation, percentile ratio, UMAP

submitter keyword: clustering,mass spectrometry imaging, amyloid-beta, Kmeans, saliency optimization, Alzheimer, brain, non-negative matrix factorization, segmentation, percentile ratio, UMAP

Contact List

Jens Pahnke
contact affiliation	University of Oslo, www.pahnkelab.eu
contact email	jens.pahnke@gmail.com
lab head
Jens Pahnke
contact affiliation	University of Oslo, University of Lübeck, University of Latvia, Tel Aviv University, www.pahnkelab.eu
contact email	jens.pahnke@gmail.com
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/03/PXD056609
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/03/PXD056609

PRIDE project URI

Repository Record List

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