PXD056416

PXD056416 is an original dataset announced via ProteomeXchange.

Title	Relation between proteome characterization and semen quality in Italian chicken breeds
Description	Phenotipic traits related to the reproductive performance of the breeder flock reared at the Centro Avicolo per la Conservazione di Risorse Genetiche Locali (Centro Zootecnico Didattico Sperimentale - CZDS, Università degli Studi di Milano, Lodi) have been recorded from April 2021 to May 2022. In April 2021, one year old breeders (n=61) were reared indoor in controlled environment. Breeders were organized in 7 groups, corresponding to different blood lines; each group included one male and a variable number (3-14) of females. Egg oviposition was started on 24 weeks of age (September 2020) and was recorded daily during the first and second year of age; weekly oviposition rate is presented in Figure 1.1. Data show different cycles of oviposition, the first one 51 weeks long and more efficient, and two further cycles shorter and less efficient in the second year of age. Overall egg production is quite limited, being only 36% the oviposition peak reached in the first year of age.
HostingRepository	PRIDE
AnnounceDate	2025-10-13
AnnouncementXML	Submission_2025-10-12_16:41:40.294.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Simona Nonnis
SpeciesList	scientific name: Gallus gallus (Chicken); NCBI TaxID: NEWT:9031; scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: NEWT:3702;
ModificationList	monohydroxylated residue; deamidated residue
Instrument	Q Exactive HF

Revision	Datetime	Status	ChangeLog Entry
0	2024-10-01 02:01:04	ID requested
⏵ 1	2025-10-12 16:41:41	announced

10.1371/journal.pone.0333802;

Nonnis S, Maffioli E, Grana J, Madeddu M, Zaniboni L, Marelli SP, Perricone V, Iaffaldano N, Tedeschi G, Cerolini S, Relation between proteome characterization and semen quality in Italian chicken breeds. PLoS One, 20(10):e0333802(2025) [pubmed]

submitter keyword: Proteomics, nanoLC-MS/MS

Simona Nonnis
contact affiliation	DIVAS, University of Milan
contact email	simona.nonnis@unimi.it
lab head
Simona Nonnis
contact affiliation	University of Milan
contact email	simona.nonnis@unimi.it
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/10/PXD056416

PRIDE project URI

• PRIDE
  1. PXD056416
     1. Label: PRIDE project
     2. Name: Relation between proteome characterization and semen quality in Italian chicken breeds