PXD056160

PXD056160 is an original dataset announced via ProteomeXchange.

Title	Proteome Characterization of HFFs Upon NORAD lncRNA Knockdown
Description	Mass spectrometry data were processed using MSFragger via FragPipe with default parameters. For downstream analysis, Perseus was used. The MaxLFQ intensity values were log2-transformed and filtered to include only proteins detected in at least two replicates. Missing values were imputed from a normal distribution. Statistical analysis was performed using a two-sample t-test, with a permutation-based FDR applied (S0 parameter = 0.1)
HostingRepository	PRIDE
AnnounceDate	2024-12-23
AnnouncementXML	Submission_2024-12-23_11:02:30.092.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Amir Argoetti
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	Orbitrap Exploris 480

Revision	Datetime	Status	ChangeLog Entry
0	2024-09-24 02:47:22	ID requested
⏵ 1	2024-12-23 11:02:30	announced

Dataset with its publication pending

submitter keyword: NORAD, Interferon, HFF, lncRNA, STAT3

Yael Mandel-Gutfreund
contact affiliation	Faculty of Biology, Technion – Israel Institute of Technology
contact email	yaelmg@technion.ac.il
lab head
Amir Argoetti
contact affiliation	Technion
contact email	amirargoetti@campus.technion.ac.il
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/12/PXD056160

PRIDE project URI

• PRIDE
  1. PXD056160
     1. Label: PRIDE project
     2. Name: Proteome Characterization of HFFs Upon NORAD lncRNA Knockdown