PXD054958

PXD054958 is an original dataset announced via ProteomeXchange.

Title	Proteome4Pandemic Preparedness: Proteomics, an agnostic approach to identify virusesProteome4Pandemic Preparedness: Proteomics, an agnostic approach to identify viruses
Description	Humans can be infected by a wide variety of virus species. To detect these different viruses, a data analysis approach for shotgun proteomic data was developed. For this proteome for pandemic preparedness (P4PP) pipeline, a database (P4PPv01) and a web application (P4PP) were constructed. The P4PP pipeline enables the identification of 1896 virus species from the 32 virus families in which at least one human-infectious virus is described. To evaluate the developed analysis pipeline 12 purchased heat inactivated supernatant of virus cultures (Helvetica Health Care Sàrl, Geneva, Switzerland), the supernatant of an in-house cultured Human Adenovirus 5 (ATCC VR-5) and Modified Vaccinia virus Ankara (ATCC VR1508). The purchased supernatant of the viruses cultures and Human Adenovirus 5 were tested undiluted. Vaccinia virus Ankara were tested, undiluted, 2.5 x and 5 x diluted supernatant.) were analyzed.
HostingRepository	PRIDE
AnnounceDate	2025-05-27
AnnouncementXML	Submission_2025-05-27_04:43:41.280.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD054958
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Armand Paauw
SpeciesList	scientific name: Human orthorubulavirus 4; NCBI TaxID: 2560526; scientific name: Rhinovirus A; NCBI TaxID: 147711; scientific name: H1N1 subtype; NCBI TaxID: 114727; scientific name: Modified Vaccinia Ankara virus; NCBI TaxID: 467144; scientific name: Human adenovirus C serotype 5 (HAdV-5) (Human adenovirus 5); NCBI TaxID: 28285; scientific name: Human parechovirus 3; NCBI TaxID: 195055; scientific name: Influenza A virus H3N2; NCBI TaxID: 41857; scientific name: Measles virus genotype B3; NCBI TaxID: 658048; scientific name: Influenza B virus; NCBI TaxID: 11520; scientific name: Severe acute respiratory syndrome coronavirus 2; NCBI TaxID: 2697049; scientific name: West Nile virus; NCBI TaxID: 11082;
ModificationList	monohydroxylated residue
Instrument	Orbitrap Eclipse

Revision	Datetime	Status	ChangeLog Entry
0	2024-08-16 05:40:33	ID requested
⏵ 1	2025-05-27 04:43:41	announced

10.6019/PXD054958;

submitter keyword: identification, cell culture,virus, LC-MS/MS

Dr. ir. A.M.J. (Annette) Kliphuis
contact affiliation	Research Manager, TNO, Department CBRN protection, The Netherlands (lab head)
contact email	annette.kliphuis@tno.nl
lab head
Armand Paauw
contact affiliation	TNO
contact email	armand.paauw@tno.nl
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/05/PXD054958

PRIDE project URI

• PRIDE
  1. PXD054958
     1. Label: PRIDE project
     2. Name: Proteome4Pandemic Preparedness: Proteomics, an agnostic approach to identify virusesProteome4Pandemic Preparedness: Proteomics, an agnostic approach to identify viruses