PXD054720 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | ABRF iPRG 2023 crosslinking study - Mascot COMPLETE results |
Description | The three proteomics research groups, Proteomics (PRG), Proteome Informatics (iPRG) and Proteomics Standards (sPRG), have all held interesting studies over the years. This year (2023) the iPRG group has put together a crosslinking study. The goal is to teach people how to analyze crosslinked samples with existing software and provide them with data sets that they can practice on. It is then hoped that more core labs will offer crosslinking analysis as a service to customers and collaborators. This particular submission provides the Mascot results in COMPLETE dataset format supporting mzIdentML 1.2.0 and it is used as a gold-standard for the new PRIDE Archive resource https://www.ebi.ac.uk/pride/archive/crosslinking. |
HostingRepository | PRIDE |
AnnounceDate | 2024-08-08 |
AnnouncementXML | Submission_2024-08-08_10:30:40.966.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD054720 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Yasset Perez-Riverol |
SpeciesList | scientific name: Escherichia coli (strain K12); NCBI TaxID: 83333; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Orbitrap Fusion Lumos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2024-08-08 10:05:27 | ID requested | |
⏵ 1 | 2024-08-08 10:30:41 | announced | |
Publication List
Keyword List
submitter keyword: cross-linking, ABRF iPRG, benchmark,crosslinking |
Contact List
Yasset Perez-Riverol |
contact affiliation | European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Cambridge, UK |
contact email | yperez@ebi.ac.uk |
lab head | |
Yasset Perez-Riverol |
contact affiliation | EBI |
contact email | yperez@ebi.ac.uk |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/08/PXD054720 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD054720
- Label: PRIDE project
- Name: ABRF iPRG 2023 crosslinking study - Mascot COMPLETE results