PXD054613
PXD054613 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Metabolic characterization of two white-rot fungi in diverse cultivation environments reveals biotechnologically relevant biosynthetic pathways |
| Description | Two white-rot fungi, Trametes versicolor and Gelatoporia subvermispora, were cultivated in different environments - agitation and static incubation modes and variations in the level of antioxidants - during the conversion of a lignin-related aromatic compound and cellobiose. Both incubation mode and the presence of antioxidants impact sugars and aromatic catabolism, as well as lipid composition of the fungal mycelia, and the analyses reveal biosynthetic pathways for the production of extracellular fatty acids and phenylpropanoids by these fungi. |
| HostingRepository | MassIVE |
| AnnounceDate | 2025-02-19 |
| AnnouncementXML | Submission_2025-02-19_13:56:03.015.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Non peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Supported dataset by repository |
| PrimarySubmitter | Matthew Monroe |
| SpeciesList | scientific name: Gelatoporia subvermispora; NCBI TaxID: 42742; scientific name: Trametes versicolor; NCBI TaxID: 5325; |
| ModificationList | Oxidation |
| Instrument | Q Exactive HF |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2024-08-05 18:47:05 | ID requested | |
| ⏵ 1 | 2025-02-19 13:56:03 | announced |
Publication List
| no publication |
Keyword List
| submitter keyword: lignin, aromatic compounds, 4-hydroxybenzoate, hydroxyquinol, multi-omics, systems biology |
Contact List
| Davinia Salvachua | |
|---|---|
| contact affiliation | National Renewable Energy Laboratory |
| contact email | davinia.salvachua@nrel.gov |
| lab head | |
| Matthew Monroe | |
| contact affiliation | Pacific Northwest National Laboratory |
| contact email | matthew.monroe@pnnl.gov |
| dataset submitter | |
Full Dataset Link List
| MassIVE dataset URI |
| Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/v08/MSV000095519/ |
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