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PXD054325

PXD054325 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleIP-MS experiment with biotin-iZMYND8-34 to analyze its associated proteins
DescriptionThe raw data of IP-MS analysis was analyzed in MaxQuant (version 2.0.1.0) software against the UniProt Mycolicibacterium smegmatis database (6602 sequences, Proteome ID: UP000000757). The trypsin/P was set as the protease and 2 missed cleavages were allowed. Carbamidomethyl (C) was set as the fixed modification, acetylation (Protein N-term) and oxidation (M) was set as variable modifications. The iBAQ values of each protein calculated through MaxQuant software were used for quantitation analysis. The quantitated proteins acquired in three of four biological replicates (fold-change higher than 2 or identified only in the experimental group) were defined as potential candidate proteins.
HostingRepositoryiProX
AnnounceDate2024-07-28
AnnouncementXMLSubmission_2024-12-23_18:05:00.203.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterLing Han
SpeciesList scientific name: Homo sapiens; NCBI TaxID: 9606;
ModificationListNo PTMs are included in the dataset
InstrumentQ Exactive HF-X
Dataset History
RevisionDatetimeStatusChangeLog Entry
02024-07-28 23:47:48ID requested
⏵ 12024-12-23 18:05:00announced
Publication List
Dataset with its publication pending
Keyword List
submitter keyword: Prostate cancer, LC-MS/MS
Contact List
Jun Qin
contact affiliationShanghai Institute of Nutrition and Health
contact emailhlwang@sinh.ac.cn
lab head
Ling Han
contact affiliationShanghai Institute of Nutrition and Health
contact emailhlwang@sinh.ac.cn
dataset submitter
Full Dataset Link List
iProX dataset URI

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