PXD053926

PXD053926 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Understanding the genetic and structural bases of hornworts' carbon-concentrating mechanism
Description	Proteomic measurements to identify putative Rubisco interacting proteins in hornworts compared to the green alga Chlamydomonas, the traditional model for studying pyrenoid-based CO2-concentrating mechanisms (pCCM). Using antibodies and immunoprecipitation against hornwort Rubisco large subunits to pull down Rubisco and any proteins that bind to it. Samples were digested with trypsin, then analyzed by LC-MS/MS. Data was searched with MS-GF+ using PNNL's DMS processing pipeline against Anthoceros agrestis proteome.
HostingRepository	MassIVE
AnnounceDate	2025-02-19
AnnouncementXML	Submission_2025-02-19_16:04:06.935.xml
DigitalObjectIdentifier
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Matthew Monroe
SpeciesList	scientific name: Anthoceros agrestis; NCBI TaxID: 41834;
ModificationList	Oxidation
Instrument	Orbitrap Eclipse

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2024-07-12 15:57:07	ID requested
⏵ 1	2025-02-19 16:04:07	announced

Publication List

no publication

no publication

Keyword List

submitter keyword: hornworts, CO2-concentrating mechanism, proteomics, LC-MS/MS

submitter keyword: hornworts, CO2-concentrating mechanism, proteomics, LC-MS/MS

Contact List

Fay-Wei Li
contact affiliation	Boyce Thompson Institute for Plant Research, Cornell University
contact email	fl329@cornell.edu
lab head
Matthew Monroe
contact affiliation	Pacific Northwest National Laboratory
contact email	matthew.monroe@pnnl.gov
dataset submitter

Full Dataset Link List

MassIVE dataset URI
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MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/v08/MSV000095322/