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PXD053911

PXD053911 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleCellEKT: A chemical proteomics assay to profile cellular target engagement of kinase inhibitors
DescriptionActivity-based protein profiling is a powerful tool to study target engagement in complex biological environments. XO44, ALX005 and ALX011 are chemical probes based on the scaffold of a promiscuous kinase binder, which covalently reacts with a conserved lysine in the ATP-binding pocket of kinases. Pretreatment of cells with a drug (candidate) results in competition of XO44/ALX005/ALX011 binding, which can be interpreted as in situ target engagement. Here CellEKT is presented, a workflow which is optimized for kinome coverage, reproducibility and data processing. This dataset pertains to the selectivity testing of Dasatinib in MV4-11 cells using a probe cocktail of XO44, ALX005 and ALX011.
HostingRepositoryPRIDE
AnnounceDate2025-04-08
AnnouncementXMLSubmission_2025-04-08_07:14:52.860.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterJoel Rüegger
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListiodoacetamide derivatized residue
InstrumentQ Exactive HF
Dataset History
RevisionDatetimeStatusChangeLog Entry
02024-07-12 04:03:37ID requested
12025-04-08 07:14:53announced
Publication List
10.1016/J.MCPRO.2025.100961;
Keyword List
submitter keyword: ABPP, drug discovery, ALX005,CellEKT, chemical proteomics, ALX011, kinase, XO44
Contact List
Mario van der Stelt
contact affiliationProfessor of Molecular Physiology, Leiden Institute of Chemistry, Leiden University, The Netherlands
contact emailm.van.der.stelt@chem.leidenuniv.nl
lab head
Joel Rüegger
contact affiliationLeiden University
contact emailj.ruegger@lic.leidenuniv.nl
dataset submitter
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Dataset FTP location
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PRIDE project URI
Repository Record List
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