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PXD053814

PXD053814 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleDiscovery of dehydroamino acids and their crosslinks in Alzheimer's Disease
DescriptionAlzheimer’s disease is characterized by the accumulation of protein aggregates. Dehydroamino acids are rarely observed posttranslational modifications that contain an electrophilic alkene capable of forming protein-protein crosslinks, which may lead to protein aggregation. We used mass spectrometry-based proteomics to discover 412 sites of dehydroamino acid formation in 184 proteins from protein aggregate-enriched human brain samples, an order of magnitude more than observed in the soluble protein fractions. We further report 11 dehydroamino acid-mediated crosslinks, including 3 in the Tau protein that are 10-fold more abundant in Alzheimer’s disease samples compared to age-matched controls. Dehydroamino acids are prevalent modifications in the Alzheimer’s disease brain proteome and give rise to protein crosslinks that may contribute to protein aggregation.
HostingRepositoryPRIDE
AnnounceDate2025-03-06
AnnouncementXMLSubmission_2025-03-06_12:28:01.925.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterSamuel Markovich
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListdehydroalanine (Cys); dehydroalanine (Ser); dehydrobutyrine (Thr); phosphorylated residue
InstrumentQ Exactive HF
Dataset History
RevisionDatetimeStatusChangeLog Entry
02024-07-09 18:24:42ID requested
12025-03-06 12:28:02announced
Publication List
Markovich SW, Frey BL, Scalf M, Shortreed MR, Smith LM, Dehydroamino acids and their crosslinks in Alzheimer's disease aggregates. Brain Commun, 7(1):fcaf019(2025) [pubmed]
10.1093/braincomms/fcaf019;
Keyword List
submitter keyword: CRMP2,Alzheimer's Disease, Tau, GAPDH, Dehydroamino acids, crosslinks
Contact List
Lloyd M
contact affiliationProfessor of Chemistry, University of Wisconsin - Madison
contact emailsmith@chem.wisc.edu
lab head
Samuel Markovich
contact affiliationUniversity of Wisconsin-Madison
contact emailsmarkovich@wisc.edu
dataset submitter
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Dataset FTP location
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