PXD053814 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Discovery of dehydroamino acids and their crosslinks in Alzheimer's Disease |
Description | Alzheimer’s disease is characterized by the accumulation of protein aggregates. Dehydroamino acids are rarely observed posttranslational modifications that contain an electrophilic alkene capable of forming protein-protein crosslinks, which may lead to protein aggregation. We used mass spectrometry-based proteomics to discover 412 sites of dehydroamino acid formation in 184 proteins from protein aggregate-enriched human brain samples, an order of magnitude more than observed in the soluble protein fractions. We further report 11 dehydroamino acid-mediated crosslinks, including 3 in the Tau protein that are 10-fold more abundant in Alzheimer’s disease samples compared to age-matched controls. Dehydroamino acids are prevalent modifications in the Alzheimer’s disease brain proteome and give rise to protein crosslinks that may contribute to protein aggregation. |
HostingRepository | PRIDE |
AnnounceDate | 2025-03-06 |
AnnouncementXML | Submission_2025-03-06_12:28:01.925.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Samuel Markovich |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | dehydroalanine (Cys); dehydroalanine (Ser); dehydrobutyrine (Thr); phosphorylated residue |
Instrument | Q Exactive HF |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2024-07-09 18:24:42 | ID requested | |
⏵ 1 | 2025-03-06 12:28:02 | announced | |
Publication List
Markovich SW, Frey BL, Scalf M, Shortreed MR, Smith LM, Dehydroamino acids and their crosslinks in Alzheimer's disease aggregates. Brain Commun, 7(1):fcaf019(2025) [pubmed] |
10.1093/braincomms/fcaf019; |
Keyword List
submitter keyword: CRMP2,Alzheimer's Disease, Tau, GAPDH, Dehydroamino acids, crosslinks |
Contact List
Lloyd M |
contact affiliation | Professor of Chemistry, University of Wisconsin - Madison |
contact email | smith@chem.wisc.edu |
lab head | |
Samuel Markovich |
contact affiliation | University of Wisconsin-Madison |
contact email | smarkovich@wisc.edu |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD053814
- Label: PRIDE project
- Name: Discovery of dehydroamino acids and their crosslinks in Alzheimer's Disease