PXD053598

PXD053598 is an original dataset announced via ProteomeXchange.

Title	Shotgun proteomic data of Desulfonema limicola
Description	Sulfate-reducing bacteria (SRB) play a pivotal role in the global carbon- and sulfur cycles, especially in the marine environment. Here, continental margins, coastal ranges, and shelf sediments stand out by their high input of organic matter, and more than 50% of their mineralization is achieved in the upper sediment layers, coupled to sulfate reduction. This turnover is mainly achieved by members of the family of Desulfobacteraceae of completely oxidizing SRB. Desulfonema limicola is a member of this family.
HostingRepository	PRIDE
AnnounceDate	2025-03-11
AnnouncementXML	Submission_2025-03-11_08:41:57.692.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Lars Wöhlbrand
SpeciesList	scientific name: Desulfonema limicola str. Jadebusen; NCBI TaxID: 859314;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Bruker Daltonics amaZon series

Revision	Datetime	Status	ChangeLog Entry
0	2024-07-03 04:10:27	ID requested
⏵ 1	2025-03-11 08:41:58	announced

10.1126/sciadv.ads5631;

W, ö, hlbrand L, D, ö, rries M, Siani R, Medrano-Soto A, Schnaars V, Schumacher J, Hilbers C, Thies D, Kube M, Reinhardt R, Schloter M, Saier MH, Winklhofer M, Rabus R, in C/S cycles of marine sediments is based on congeneric catabolic-regulatory networks. Sci Adv, 11(10):eads5631(2025) [pubmed]

submitter keyword: LC-MSMS,Desulfonema limicola, Desulfobacteraceae

Ralf Rabus
contact affiliation	General and molecular microbiology, Institute for chemistry and biology of the marine environment (ICBM), Carl von Ossietzky University of Oldenburg, Oldenburg, Germany
contact email	rabus@icbm.de
lab head
Lars Wöhlbrand
contact affiliation	General and Molecular Microbiology
contact email	lars.woehlbrand@uni-oldenburg.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/03/PXD053598

PRIDE project URI

• PRIDE
  1. PXD053598
     1. Label: PRIDE project
     2. Name: Shotgun proteomic data of Desulfonema limicola