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PXD053598

PXD053598 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleShotgun proteomic data of Desulfonema limicola
DescriptionSulfate-reducing bacteria (SRB) play a pivotal role in the global carbon- and sulfur cycles, especially in the marine environment. Here, continental margins, coastal ranges, and shelf sediments stand out by their high input of organic matter, and more than 50% of their mineralization is achieved in the upper sediment layers, coupled to sulfate reduction. This turnover is mainly achieved by members of the family of Desulfobacteraceae of completely oxidizing SRB. Desulfonema limicola is a member of this family.
HostingRepositoryPRIDE
AnnounceDate2025-03-11
AnnouncementXMLSubmission_2025-03-11_08:41:57.692.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterLars Wöhlbrand
SpeciesList scientific name: Desulfonema limicola str. Jadebusen; NCBI TaxID: 859314;
ModificationListmonohydroxylated residue; iodoacetamide derivatized residue
InstrumentBruker Daltonics amaZon series
Dataset History
RevisionDatetimeStatusChangeLog Entry
02024-07-03 04:10:27ID requested
12025-03-11 08:41:58announced
Publication List
10.1126/sciadv.ads5631;
W, ö, hlbrand L, D, ö, rries M, Siani R, Medrano-Soto A, Schnaars V, Schumacher J, Hilbers C, Thies D, Kube M, Reinhardt R, Schloter M, Saier MH, Winklhofer M, Rabus R, in C/S cycles of marine sediments is based on congeneric catabolic-regulatory networks. Sci Adv, 11(10):eads5631(2025) [pubmed]
Keyword List
submitter keyword: LC-MSMS,Desulfonema limicola, Desulfobacteraceae
Contact List
Ralf Rabus
contact affiliationGeneral and molecular microbiology, Institute for chemistry and biology of the marine environment (ICBM), Carl von Ossietzky University of Oldenburg, Oldenburg, Germany
contact emailrabus@icbm.de
lab head
Lars Wöhlbrand
contact affiliationGeneral and Molecular Microbiology
contact emaillars.woehlbrand@uni-oldenburg.de
dataset submitter
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Dataset FTP location
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PRIDE project URI
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