PXD053594 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Shotgun proteomic data of Desulfonema magnum |
Description | Sulfate-reducing bacteria (SRB) play a pivotal role in the global carbon- and sulfur cycles, especially in the marine environment. Here, continental margins, coastal ranges, and shelf sediments stand out by their high input of organic matter, and more than 50% of their mineralization is achieved in the upper sediment layers, coupled to sulfate reduction. This turnover is mainly achieved by members of the family of Desulfobacteraceae of completely oxidizing SRB. Desulfonema magnum is a member of this family. |
HostingRepository | PRIDE |
AnnounceDate | 2025-03-11 |
AnnouncementXML | Submission_2025-03-11_08:44:31.094.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Lars Wöhlbrand |
SpeciesList | scientific name: Desulfonema magnum str. Montpellier; NCBI TaxID: 859313; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Bruker Daltonics amaZon series |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2024-07-03 02:00:55 | ID requested | |
⏵ 1 | 2025-03-11 08:44:31 | announced | |
Publication List
10.1126/sciadv.ads5631; |
W, ö, hlbrand L, D, ö, rries M, Siani R, Medrano-Soto A, Schnaars V, Schumacher J, Hilbers C, Thies D, Kube M, Reinhardt R, Schloter M, Saier MH, Winklhofer M, Rabus R, in C/S cycles of marine sediments is based on congeneric catabolic-regulatory networks. Sci Adv, 11(10):eads5631(2025) [pubmed] |
Keyword List
submitter keyword: LC-MSMS, Desulfobacteraceae,Desulfonema magnum |
Contact List
Rtalf Rabus |
contact affiliation | General and molecular microbiology, Institute for chemistry and biology of the marine environment (ICBM), Carl von Ossietzky University of Oldenburg, Oldenburg, Germany |
contact email | rabus@icbm.de |
lab head | |
Lars Wöhlbrand |
contact affiliation | General and Molecular Microbiology |
contact email | lars.woehlbrand@uni-oldenburg.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/03/PXD053594 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD053594
- Label: PRIDE project
- Name: Shotgun proteomic data of Desulfonema magnum