PXD052557

PXD052557 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Identification of proteins associated with KhpA and khpB in the bacterium Deinococcus radiodurans
Description	To examine if this is also the case in D. radiodurans and what other proteins interact with KhpA/KhpB proteins in D. radiodurans, KhpA and KhpB were tagged with 3FLAG epitope at the C-terminus chromosomally or through expression on the pRADgro plasmid, followed by protein-protein coimmunoprecipitation (coIP) experiments. Compared to WT, only 8 proteins were enriched significantly with KhpA-3FLAG relative to the WT strain expressing untagged KhpA on pRADgro. By contrast, 28 proteins were significantly enriched with KhpB-3xFLAG.
HostingRepository	MassIVE
AnnounceDate	2024-05-24
AnnouncementXML	Submission_2024-05-24_09:49:54.841.xml
DigitalObjectIdentifier
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Runhua Han
SpeciesList	scientific name: Deinococcus radiodurans R1; NCBI TaxID: 243230;
ModificationList	No PTMs are included in the dataset
Instrument	LTQ Orbitrap Elite

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2024-05-24 09:03:25	ID requested
⏵ 1	2024-05-24 09:49:55	announced

Publication List

no publication

no publication

Keyword List

submitter keyword: small RNA, RNA-protein interaction, RNA binding protein, RNA regulation, Deinococcus radiodurans

submitter keyword: small RNA, RNA-protein interaction, RNA binding protein, RNA regulation, Deinococcus radiodurans

Contact List

Lydia M. Contreras
contact affiliation	the University of Texas at Austin
contact email	lcontrer@che.utexas.edu
lab head
Runhua Han
contact affiliation	UT Austin
contact email	runhuahan@gmail.com
dataset submitter

Full Dataset Link List

MassIVE dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/v08/MSV000094865/

MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/v08/MSV000094865/