PXD051980

PXD051980 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Human CVL LC-MSMS to Elucidate Functions in Bacterial Vaginosis
Description	Bacterial vaginosis (BV) is a common state of the vaginal microbiota characterized by increased bacterial diversity and decreased Lactobacillus abundance. Using untargeted metaproteomics, we identified host and bacterial proteins in a set of 29 cervicovaginal lavage samples from people with and without BV which revealed functions and interactions that likely contribute to BV.
HostingRepository	PRIDE
AnnounceDate	2025-03-07
AnnouncementXML	Submission_2025-03-07_03:22:54.262.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Elliot Lee
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	LTQ Orbitrap Velos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2024-05-03 17:06:13	ID requested
⏵ 1	2025-03-07 03:22:55	announced

Publication List

10.1128/msystems.00678-22;
Lee EM, Srinivasan S, Purvine SO, Fiedler TL, Leiser OP, Proll SC, Minot SS, Deatherage Kaiser BL, Fredricks DN, Optimizing metaproteomics database construction: lessons from a study of the vaginal microbiome. mSystems, 8(4):e0067822(2023) [pubmed]

10.1128/msystems.00678-22;

Lee EM, Srinivasan S, Purvine SO, Fiedler TL, Leiser OP, Proll SC, Minot SS, Deatherage Kaiser BL, Fredricks DN, Optimizing metaproteomics database construction: lessons from a study of the vaginal microbiome. mSystems, 8(4):e0067822(2023) [pubmed]

Keyword List

submitter keyword: Human Vagina LC-MSMS BV

submitter keyword: Human Vagina LC-MSMS BV

Contact List

David N
contact affiliation	Fred Hutchinson Cancer Center, Seattle WA, USA
contact email	dfredric@fredhutch.org
lab head
Elliot Lee
contact affiliation	Fred Hutch Cancer Center
contact email	emlee@fredhutch.org
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/03/PXD051980
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/03/PXD051980

PRIDE project URI

Repository Record List

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