⮝ Full datasets listing

PXD051333

PXD051333 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitlePeptidomic and proteomic analysis of precision-cut lung slice supernatants
DescriptionThe data provided here is related to the publication “Peptidomic and proteomic analysis of precision-cut lung slice supernatants”. In this study, we sought out to develop a method that could incorporate a peptidomic and proteomic endpoint within the same workflow. The developed workflow was adapted from single-pot, solid-phase-enhanced sample preparation (SP3) for examining the proteome and peptidome of precision-cut lung slice supernatants in one experimental procedure to save sample material. A part of the study compared potential differences when utilizing different organic solvents for binding peptides and proteins to magnetic beads for biological replicates of PCLS supernatant. In connection, the workflow robustness was also characterized by investigating technical replicates of the same biological PCLS supernatant sample.
HostingRepositoryPRIDE
AnnounceDate2025-03-10
AnnouncementXMLSubmission_2025-03-10_04:14:43.889.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterLasse Gøbel Lorentzen
SpeciesList scientific name: Rattus norvegicus (Rat); NCBI TaxID: 10116;
ModificationListNo PTMs are included in the dataset
InstrumenttimsTOF Pro
Dataset History
RevisionDatetimeStatusChangeLog Entry
02024-04-10 05:34:25ID requested
12025-03-10 04:14:44announced
Publication List
10.1016/J.AB.2025.115837;
Keyword List
submitter keyword: Proteomics Peptidomics
Contact List
Micheal J
contact affiliationBMI, University of Copenhagen, Copenhagen, Denmark
contact emaildavies@sund.ku.dk
lab head
Lasse Gøbel Lorentzen
contact affiliationUniversity of Copenhagen
contact emaillassegl@sund.ku.dk
dataset submitter
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/03/PXD051333
PRIDE project URI
Repository Record List
[ + ]