PXD051333 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Peptidomic and proteomic analysis of precision-cut lung slice supernatants |
Description | The data provided here is related to the publication “Peptidomic and proteomic analysis of precision-cut lung slice supernatants”. In this study, we sought out to develop a method that could incorporate a peptidomic and proteomic endpoint within the same workflow. The developed workflow was adapted from single-pot, solid-phase-enhanced sample preparation (SP3) for examining the proteome and peptidome of precision-cut lung slice supernatants in one experimental procedure to save sample material. A part of the study compared potential differences when utilizing different organic solvents for binding peptides and proteins to magnetic beads for biological replicates of PCLS supernatant. In connection, the workflow robustness was also characterized by investigating technical replicates of the same biological PCLS supernatant sample.
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HostingRepository | PRIDE |
AnnounceDate | 2025-03-10 |
AnnouncementXML | Submission_2025-03-10_04:14:43.889.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Lasse Gøbel Lorentzen |
SpeciesList | scientific name: Rattus norvegicus (Rat); NCBI TaxID: 10116; |
ModificationList | No PTMs are included in the dataset |
Instrument | timsTOF Pro |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2024-04-10 05:34:25 | ID requested | |
⏵ 1 | 2025-03-10 04:14:44 | announced | |
Publication List
Keyword List
submitter keyword: Proteomics Peptidomics |
Contact List
Micheal J |
contact affiliation | BMI, University of Copenhagen, Copenhagen, Denmark |
contact email | davies@sund.ku.dk |
lab head | |
Lasse Gøbel Lorentzen |
contact affiliation | University of Copenhagen |
contact email | lassegl@sund.ku.dk |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD051333
- Label: PRIDE project
- Name: Peptidomic and proteomic analysis of precision-cut lung slice supernatants