PXD050558
PXD050558 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | B._Raktan_Ahmed_P131_VS15_2024 |
| Description | This dataset consists of 363 raw MS files and associated peak lists and result files, acquired on a TripleTOF 6600 mass spectrometer operated in Data Independent Acquisition mode (SWATH). It also includes the sequence database used for analysis and the MSPLIT spectral library which was generated from paired samples acquired in Data Dependent Acquisition (DDA) mode. All sample generation, streptavidin affinity purification, mass spectrometric acquisition, and data analysis was performed by B. Raktan Ahmed. The files are associated with a manuscript submitted for publication by Dyakov et al. that provides a spatial map of nuclear body-associated proteins with a focus on the paraspeckle and nuclear speckle. Anne-Claude Gingras is the corresponding author of the manuscript and should be contacted for questions about this dataset (gingras@lunenfeld.ca). This submission is associated with 4 Supplementary Files (in addition to this README file): Table 1 describes the composition of this dataset Table 2 lists the protein evidence for the entire dataset Table 3 lists the SAINT output (results) Internal reference from the Gingras lab ProHits implementation: Project: P131 Export version VS15 SAINT Task ID: 6779 |
| HostingRepository | MassIVE |
| AnnounceDate | 2024-07-02 |
| AnnouncementXML | Submission_2024-07-02_23:07:55.381.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Non peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Supported dataset by repository |
| PrimarySubmitter | Gingras Lab |
| SpeciesList | scientific name: Homo sapiens; common name: human; NCBI TaxID: 9606; |
| ModificationList | deamidated L-asparagine; deamidated L-glutamine; L-methionine sulfoxide |
| Instrument | TripleTOF 6600 |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2024-03-12 09:43:47 | ID requested | |
| ⏵ 1 | 2024-07-02 23:07:55 | announced |
Publication List
| no publication |
Keyword List
| submitter keyword: BioID, Proximity-dependent biotinylation, Protein-protein interaction, RNA biology, Nuclear bodies , Nuclear speckle , Splicing speckle, Paraspeckle |
Contact List
| Anne-Claude Gingras | |
|---|---|
| contact affiliation | LTRI |
| contact email | gingras@lunenfeld.ca |
| lab head | |
| Gingras Lab | |
| contact affiliation | Samuel Lunenfeld Research Institute |
| contact email | gingras@mshri.on.ca |
| dataset submitter | |
Full Dataset Link List
| MassIVE dataset URI |
| Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/v07/MSV000094294/ |
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