PXD050548 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Evaluating sequence alignment for metaproteomics applications |
Description | This dataset was utilized to assess the performance of a novel de novo metaproteomics pipeline, which performs sequence alignment of de novo sequences from complete metaproteomics experiments. Traditionally, metaproteomics data annotation relies on database searching that requires sample-specific databases derived from whole metagenome sequencing experiments. Creating these databases, however, is a complex, time-consuming, and error prone process, which can introduce biases affecting the outcomes and conclusions, highlighting the need for alternative methods. The evaluated approach offers rapid and orthogonal insights into metaproteomics data. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_07:01:02.396.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Martin Pabst |
SpeciesList | scientific name: Saccharomyces cerevisiae (Baker's yeast); NCBI TaxID: 4932; |
ModificationList | iodoacetamide derivatized residue |
Instrument | Q Exactive HF |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2024-03-11 22:27:22 | ID requested | |
1 | 2024-10-11 05:08:09 | announced | |
⏵ 2 | 2024-10-22 07:01:02 | announced | 2024-10-22: Updated project metadata. |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: microbial proteomics, sequence alignment, de novo sequencing, metaproteomics |
Contact List
Martin Pabst |
contact affiliation | Department of Biotechnology, Delft University of Technology, The Netherlands. |
contact email | m.pabst@tudelft.nl |
lab head | |
Martin Pabst |
contact affiliation | TUD |
contact email | m.pabst@tudelft.nl |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD050548
- Label: PRIDE project
- Name: Evaluating sequence alignment for metaproteomics applications