PXD049370 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | The S4-domain containing protein YlmH is involved in ribosome-associated quality control in Bacillus subtilis |
Description | By taking advantage of the strong genetic interactions between trans-translation and other ribosome rescue systems, we have employed a transposon sequencing (Tn-Seq) to identify potential novel rescue factors in Bacillus subtilis. In addition to the identification the ArfA-type rescue factor BrfA, as well as the RQC elongation actors RqcP and RqcH, our Tn-Seq screen led to the identification of YlmH, a poorly characterized S4-domain-containing protein, as a potential RQC factor. Binding of YlmH to 50S ribosomal subunit was confirmed by proteomics approach. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_06:58:27.346.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD049370 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Tanel Tenson |
SpeciesList | scientific name: Bacillus subtilis subsp. subtilis str. 168; NCBI TaxID: 224308; |
ModificationList | No PTMs are included in the dataset |
Instrument | Q Exactive Plus |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2024-02-14 05:53:04 | ID requested | |
1 | 2024-09-16 05:13:54 | announced | |
⏵ 2 | 2024-10-22 06:58:28 | announced | 2024-10-22: Updated project metadata. |
Publication List
Takada H, Paternoga H, Fujiwara K, Nakamoto JA, Park EN, Dimitrova-Paternoga L, Beckert B, Saarma M, Tenson T, Buskirk AR, Atkinson GC, Chiba S, Wilson DN, Hauryliuk V, A role for the S4-domain containing protein YlmH in ribosome-associated quality control in Bacillus subtilis. Nucleic Acids Res, 52(14):8483-8499(2024) [pubmed] |
10.6019/PXD049370; |
10.1093/nar/gkae399; |
Keyword List
submitter keyword: YlmH,translation, quality control |
Contact List
Vasili Hauryliuk |
contact affiliation | Lund University |
contact email | vasili.hauryliuk@med.lu.se |
lab head | |
Tanel Tenson |
contact affiliation | University of Tartu |
contact email | tanel.tenson@ut.ee |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/09/PXD049370 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD049370
- Label: PRIDE project
- Name: The S4-domain containing protein YlmH is involved in ribosome-associated quality control in Bacillus subtilis