PXD049079

PXD049079 is an original dataset announced via ProteomeXchange.

Title	The microbiome of the lichen Lobaria pulmonaria varies according to climate in Europe
Description	The Lobaria pulmonaria holobiont consists of algal, fungal, cyanobacterial, and integrated diverse bacterial components and thrives in undisturbed, humid forests. We set out to investigate the role of the microbiome of L. pulmonaria in the adaptation of this ecologically sensitive lichen species to diverse climatic conditions. Our central hypothesis posited that microbiome composition and functionality aligns with continental-scale climatic parameters related to temperature and precipitation. In addition, we tested whether short-term weather dynamics, sampling season, and the genotypes of the fungal and algal partners influenced the variation in the lichen microbiome. Insights into compositional and functional changes within the microbiome were obtained using metaproteomics. Comparative examinations between Sub-Atlantic Lowland (SAL) and Alpine (ALP) regions unveiled the distinct impact of climate on microbiome functions.
HostingRepository	PRIDE
AnnounceDate	2024-07-03
AnnouncementXML	Submission_2024-07-03_04:29:03.417.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Daniela Zuehlke
SpeciesList	scientific name: Lobaria pulmonaria; NCBI TaxID: 86794;
ModificationList	monohydroxylated residue
Instrument	LTQ Orbitrap Elite

Revision	Datetime	Status	ChangeLog Entry
0	2024-02-01 04:54:49	ID requested
⏵ 1	2024-07-03 04:29:04	announced

Bogale AT, Braun M, Bernhardt J, Z, ü, hlke D, Schiefelbein U, Bog M, Scheidegger C, Zengerer V, Becher D, Grube M, Riedel K, Bengtsson MM, The microbiome of the lichen Lobaria pulmonaria varies according to climate on a subcontinental scale. Environ Microbiol Rep, 16(3):e13289(2024) [pubmed]

10.1111/1758-2229.13289;

submitter keyword: Symbiosis, genotyping, lung lichen, holobiont, metaproteomics

Kathrin Riedel
contact affiliation	University of Greifswald, Institute of Microbiology, Department of Microbial Physiology and Molecular Biology
contact email	riedela@uni-greifswald.de
lab head
Daniela Zuehlke
contact affiliation	University of Greifswald, Institute of Microbiology
contact email	zuehlke@uni-greifswald.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/07/PXD049079

PRIDE project URI

• PRIDE
  1. PXD049079
     1. Label: PRIDE project
     2. Name: The microbiome of the lichen Lobaria pulmonaria varies according to climate in Europe