PXD048672

PXD048672 is an original dataset announced via ProteomeXchange.

Title	Mass spectrometry-based draft of the soybean proteome
Description	Soybean is a critical source of vegetable protein, yet its proteome remains under-characterized. Here, we quantify 12,855 proteins across 14 soybean organs using 4D-data-independent acquisition mass spectrometry (4D-DIA-MS), creating the most extensive soybean proteome dataset to date. Organ-specific protein expression and co-expression analyses highlight functional specificity, with significant differences in protein-transcript abundance across organs. We also map N6-methyladenosine (m6A) modifications, identifying their key role in post-transcriptional protein regulation. Integrative analysis of proteome and m6A methylome identifies novel regulator in m6A methylation. This comprehensive proteomic and m6A landscape advances our understanding of soybean biology and provides a valuable resource for crop improvement.
HostingRepository	iProX
AnnounceDate	2024-01-18
AnnouncementXML	Submission_2025-05-18_19:34:45.465.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	ZhiYang Hou
SpeciesList	scientific name: Glycine max; NCBI TaxID: 3847;
ModificationList	No PTMs are included in the dataset
Instrument	timsTOF Pro

Revision	Datetime	Status	ChangeLog Entry
0	2024-01-18 01:16:39	ID requested
⏵ 1	2025-05-18 19:34:45	announced

Dataset with its publication pending

submitter keyword: Soybean, Proteome

Zhe Liang
contact affiliation	Biotechnology Research Institute, Chinese Academy of Agricultural Sciences
contact email	liangzhe@caas.cn
lab head
ZhiYang Hou
contact affiliation	Biotechnology Research Institute, Chinese Academy of Agricultural Sciences
contact email	hzybioinformatics@163.com
dataset submitter

iProX dataset URI