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PXD048672

PXD048672 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleMass spectrometry-based draft of the soybean proteome
DescriptionSoybean is a critical source of vegetable protein, yet its proteome remains under-characterized. Here, we quantify 12,855 proteins across 14 soybean organs using 4D-data-independent acquisition mass spectrometry (4D-DIA-MS), creating the most extensive soybean proteome dataset to date. Organ-specific protein expression and co-expression analyses highlight functional specificity, with significant differences in protein-transcript abundance across organs. We also map N6-methyladenosine (m6A) modifications, identifying their key role in post-transcriptional protein regulation. Integrative analysis of proteome and m6A methylome identifies novel regulator in m6A methylation. This comprehensive proteomic and m6A landscape advances our understanding of soybean biology and provides a valuable resource for crop improvement.
HostingRepositoryiProX
AnnounceDate2024-01-18
AnnouncementXMLSubmission_2025-05-18_19:34:45.465.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterZhiYang Hou
SpeciesList scientific name: Glycine max; NCBI TaxID: 3847;
ModificationListNo PTMs are included in the dataset
InstrumenttimsTOF Pro
Dataset History
RevisionDatetimeStatusChangeLog Entry
02024-01-18 01:16:39ID requested
12025-05-18 19:34:45announced
Publication List
Dataset with its publication pending
Keyword List
submitter keyword: Soybean, Proteome
Contact List
Zhe Liang
contact affiliationBiotechnology Research Institute, Chinese Academy of Agricultural Sciences
contact emailliangzhe@caas.cn
lab head
ZhiYang Hou
contact affiliationBiotechnology Research Institute, Chinese Academy of Agricultural Sciences
contact emailhzybioinformatics@163.com
dataset submitter
Full Dataset Link List
iProX dataset URI