PXD048672
PXD048672 is an original dataset announced via ProteomeXchange.
Dataset Summary
Title | Mass spectrometry-based draft of the soybean proteome |
Description | Soybean is a critical source of vegetable protein, yet its proteome remains under-characterized. Here, we quantify 12,855 proteins across 14 soybean organs using 4D-data-independent acquisition mass spectrometry (4D-DIA-MS), creating the most extensive soybean proteome dataset to date. Organ-specific protein expression and co-expression analyses highlight functional specificity, with significant differences in protein-transcript abundance across organs. We also map N6-methyladenosine (m6A) modifications, identifying their key role in post-transcriptional protein regulation. Integrative analysis of proteome and m6A methylome identifies novel regulator in m6A methylation. This comprehensive proteomic and m6A landscape advances our understanding of soybean biology and provides a valuable resource for crop improvement. |
HostingRepository | iProX |
AnnounceDate | 2024-01-18 |
AnnouncementXML | Submission_2025-05-18_19:34:45.465.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | ZhiYang Hou |
SpeciesList | scientific name: Glycine max; NCBI TaxID: 3847; |
ModificationList | No PTMs are included in the dataset |
Instrument | timsTOF Pro |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
---|---|---|---|
0 | 2024-01-18 01:16:39 | ID requested | |
⏵ 1 | 2025-05-18 19:34:45 | announced |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: Soybean, Proteome |
Contact List
Zhe Liang | |
---|---|
contact affiliation | Biotechnology Research Institute, Chinese Academy of Agricultural Sciences |
contact email | liangzhe@caas.cn |
lab head | |
ZhiYang Hou | |
contact affiliation | Biotechnology Research Institute, Chinese Academy of Agricultural Sciences |
contact email | hzybioinformatics@163.com |
dataset submitter |
Full Dataset Link List
iProX dataset URI |