PXD048132 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | N-glycoproteome profiling of rice |
Description | Metabolic glycan labeling (MGL) is a technique that utilizes bioorthogonal chemical reporters to investigate protein glycosylation. While this method has been widely used for glycoproteomic profiling in animals, its application in N-glycoproteomic research in crops remains limited and requires further development. In this study, we employed N-azidoacetylgalactosamine (GalNAz), a click-compatible sugar, to conduct a large-scale analysis of the N-glycoproteome in rice. Using this approach, we successfully identified 426 N-glycosylation sites and 680 N-glycosylated proteins involved in various important biological processes such as metabolism and stress response. A subset of randomly selected proteins identified by mass spectrometry were validated and confirmed to be N-glycosylated, supporting the reliability of the MGL-based method for N-glycosylation identification in rice. Moreover, by combining mass spectrometry data with biochemical validation, we discovered that the core components of the ERAD-L machinery undergo N-glycosylation. Importantly, this N-glycan modification of the ERAD-L machinery is conserved across both plants and animals. Functional studies revealed the crucial role of N-glycosylation in proper protein degradation within the ERAD-L machinery. Overall, our research significantly expanded the database of N-glycoproteins in rice and presented a highly efficient and practical approach for large-scale identification of N-glycosylated proteins, which holds potential applications for identifying N-glycosylated proteins in other crops. |
HostingRepository | PRIDE |
AnnounceDate | 2025-05-06 |
AnnouncementXML | Submission_2025-05-06_12:41:03.648.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Cong Lei |
SpeciesList | scientific name: Oryza sativa (Rice); NCBI TaxID: 4530; |
ModificationList | alpha-amino dimethylated residue; complex glycosylation |
Instrument | Orbitrap Fusion Lumos; Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2023-12-26 14:59:30 | ID requested | |
⏵ 1 | 2025-05-06 12:41:04 | announced | |
Publication List
10.1016/j.mcpro.2024.100883; |
Lei C, Li X, Li W, Chen Z, Liu S, Cheng B, Hu Y, Song Q, Qiu Y, Zhou Y, Meng X, Yu H, Zhou W, Chen X, Li J, Chemical Glycoproteomic Profiling in Rice Seedlings Reveals N-glycosylation in the ERAD-L Machinery. Mol Cell Proteomics, 24(2):100883(2025) [pubmed] |
Keyword List
submitter keyword: MS/MS, Metabolic glycan labeling, N-Glycosylation,Rice |
Contact List
Jiayang Li |
contact affiliation | Yazhouwan National Laboratory, Sanya 572024, China |
contact email | lijiayang@yzwlab.cn |
lab head | |
Cong Lei |
contact affiliation | Peking University |
contact email | conglei@pku.edu.cn |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/05/PXD048132 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD048132
- Label: PRIDE project
- Name: N-glycoproteome profiling of rice