PXD048043
PXD048043 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Schreiber_2023_VS1_Exploring options for proximity-dependent biotinylation experiments |
| Description | This dataset consists of 52 raw mass spectrometry files and associated peak lists and results files, acquired on a Thermo Orbitrap Exploris 480 operated in Data-Dependent Acquisition mode. Samples were generated by Karl Schreiber (clones were generated by Eileigh Kadijk and Karl Schreiber) and affinity purification and mass spectrometric acquisition were performed by Karl Schreiber. Analysis was performed by Karl Schreiber and Ji-Young Youn. The files are associated with a manuscript by Karl Schreiber et al. that evaluates different labeling enzymes and affinity resins for proximity-dependent biotinylation experiments. Ji-Young Youn is the corresponding author for the manuscript and should be contacted for questions regarding this dataset (jiyoung.youn@sickkids.ca). This submission is associated with three Supplementary Files (in addition to this README file): Table I describes the composition of this dataset (sample information) Table II lists all the peptide identification evidence (per MSFragger) Table III lists the SAINTexpress interactions for all analyses performed |
| HostingRepository | MassIVE |
| AnnounceDate | 2024-03-04 |
| AnnouncementXML | Submission_2024-03-04_20:14:08.131.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Non peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Supported dataset by repository |
| PrimarySubmitter | Ji-Young Youn |
| SpeciesList | scientific name: Homo sapiens; common name: human; NCBI TaxID: 9606; |
| ModificationList | L-methionine sulfoxide; N-acetylated residue |
| Instrument | Orbitrap Exploris 480 |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2023-12-21 07:13:11 | ID requested | |
| ⏵ 1 | 2024-03-04 20:14:08 | announced |
Publication List
| no publication |
Keyword List
| submitter keyword: proximity-dependent biotinylation, BioID, miniTurbo, APEX2, TDP-43, TARDBP, Streptavidin Sepharose, MagResyn MS, SAINTexpress, proximal interactions |
Contact List
| Ji-Young Youn | |
|---|---|
| contact affiliation | Hospital for Sick Children |
| contact email | jiyoung.youn@sickkids.ca |
| lab head | |
| Ji-Young Youn | |
| contact affiliation | Hospital for Sick Children |
| contact email | jiyoung.youn@sickkids.ca |
| dataset submitter | |
Full Dataset Link List
| MassIVE dataset URI |
| Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/v06/MSV000093705/ |
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