PXD047751

PXD047751 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Differences between static supernatant-, static biofilm- and flow biofilm-cells of two Lactiplantibacillus plantarum strains.
Description	This study was conducted to analyze phenotypic and proteomic differences of two Lactiplantibacillus plantarum strains (WCFS1, model strain from human saliva, and CIP104448, stool isolate) when a biofilm was produced under static conditions (well researched), or with the addition of flow (novel).
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_06:43:39.458.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Sjef Boeren
SpeciesList	scientific name: Lactobacillus plantarum WCFS1; NCBI TaxID: 220668; scientific name: Lactiplantibacillus sp.; NCBI TaxID: 2767846;
ModificationList	S-carboxamidoethyl-L-cysteine; acetylated residue; monohydroxylated residue; deamidated residue
Instrument	Orbitrap Exploris 480

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2023-12-12 05:25:09	ID requested
1	2024-06-03 02:27:42	announced
⏵ 2	2024-10-22 06:43:40	announced	2024-10-22: Updated project metadata.

Publication List

10.1016/j.bioflm.2024.100197;
Huijboom L, Rashtchi P, Tempelaars M, Boeren S, van der Linden E, Habibi M, Abee T, strains in static and dynamic flow environments. Biofilm, 7():100197(2024) [pubmed]

10.1016/j.bioflm.2024.100197;

Huijboom L, Rashtchi P, Tempelaars M, Boeren S, van der Linden E, Habibi M, Abee T, strains in static and dynamic flow environments. Biofilm, 7():100197(2024) [pubmed]

Keyword List

submitter keyword: flow-static biofilm, stress resistance, exponential vs stationary, cell wall,Lactiplantibacillus plantarum

submitter keyword: flow-static biofilm, stress resistance, exponential vs stationary, cell wall,Lactiplantibacillus plantarum

Contact List

Sjef Boeren
contact affiliation	Wageningen University
contact email	sjef.boeren@wur.nl
lab head
Sjef Boeren
contact affiliation	Biochemistry
contact email	sjef.boeren@wur.nl
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/06/PXD047751
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/06/PXD047751

PRIDE project URI

Repository Record List

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