PXD047585

PXD047585 is an original dataset announced via ProteomeXchange.

Title	Application of SWATH Mass Spectrometry and Machine Learning in Diagnosis of Inflammatory Bowel Disease Based on Stool Proteome
Description	Our hypothesis was that conducting proteomic analysis on clinical laboratory samples which are intended for the fecal calprotectin test would enable the develop-ment of a highly sensitive and specific non-invasive stool test based on mass spec-trometry. To investigate this hypothesis, we combined and applied our expertise in basic research, clinical practice, and bioinformatics to develop a precise ma-chine-learning model for the accurate diagnosis of active IBD from symptomatic non-IBDpatients.
HostingRepository	PRIDE
AnnounceDate	2024-02-01
AnnouncementXML	Submission_2024-02-01_14:16:11.944.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Elmira Shajari
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	carbamoylated residue; monohydroxylated residue
Instrument	TripleTOF 5600

Revision	Datetime	Status	ChangeLog Entry
0	2023-12-06 16:07:59	ID requested
⏵ 1	2024-02-01 14:16:12	announced

10.3390/BIOMEDICINES12020333;

submitter keyword: Human, Inflammatory bowel disease., stool

Jean-Francois Beaulieu
contact affiliation	Dep. immunology and cell biology, Faculty of Medicine and Health Sciences, Université de Sherbrooke, Canada.
contact email	jean-francois.beaulieu@usherbrooke.ca
lab head
Elmira Shajari
contact affiliation	PhD candidate
contact email	elmira.shajari@usherbrooke.ca
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/02/PXD047585

PRIDE project URI

• PRIDE
  1. PXD047585
     1. Label: PRIDE project
     2. Name: Application of SWATH Mass Spectrometry and Machine Learning in Diagnosis of Inflammatory Bowel Disease Based on Stool Proteome