PXD047227

PXD047227 is an original dataset announced via ProteomeXchange.

Title	Molecular and structural features of Hass Avocado’s peel as major modulators of its postharvest shelf life
Description	In recent years, avocados have gained popularity as a nutritive food worldwide. This trend is causing a rise in the production of this edible fruit, which is accompanied by a number of problems associated with monocultural practices. Despite massive economic gains, limited molecular and structural information has been generated about avocado ripening. Consequently, we conducted a comparative proteomics study on avocado peel and pulp during the postharvest shelf life using tandem mass tag synchronous precursor selection triple-stage mass spectrometry (TMT-SPS-MS3). We were able to identify 3161 and 1128 proteins in the peel and pulp, respectively. The peels exhibited a major over-accumulation of proteins associated with water deprivation and oxidative stress, along with abscisic acid biosynthesis. Ethylene, jasmonic acid, phenylpropanoid, and flavonoid biosynthesis pathways were activated. Structurally, we observed the accumulation of lignin and the reduction of the cuticular thickness, which coincides with the reduction in the levels of long-chain acyl-coenzyme A (CoA) synthetase (LACS) and a marginal increase in 10,16-dihydroxyhexadecanoic acid.
HostingRepository	PRIDE
AnnounceDate	2025-05-06
AnnouncementXML	Submission_2025-05-06_12:29:13.931.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Miguel Elizalde
SpeciesList	scientific name: Persea americana; NCBI TaxID: 3435;
ModificationList	TMT6plex-126 reporter+balance reagent acylated residue; monohydroxylated residue; deaminated residue; iodoacetamide derivatized residue
Instrument	Orbitrap Fusion

Revision	Datetime	Status	ChangeLog Entry
0	2023-11-24 11:00:50	ID requested
⏵ 1	2025-05-06 12:29:14	announced

Camacho-V, á, zquez C, Elizalde-Contreras JM, Reyes-Soria FA, Monribot-Villanueva JL, Guerrero-Analco JA, Juarez-Escobar J, Vel, á, zquez-L, ó, pez O, Meza-Menchaca T, Boj, ó, rquez-Vel, á, zquez E, Zamora-Brise, ñ, o JA, Ramirez-Vazquez M, Gonz, á, lez Barrenechea GA, Ibarra-Laclette E, Ruiz-May E, Towards Characterization of Hass Avocado Peel and Pulp Proteome during Postharvest Shelf Life. Proteomes, 12(4):(2024) [pubmed]

10.3390/proteomes12040028;

submitter keyword: Avocado,TMT, Proteomics

Eliel Ruiz May
contact affiliation	Instituto de ecologia A.C.
contact email	eliel.ruiz@inecol.mx
lab head
Miguel Elizalde
contact affiliation	Instituto de Ecolog'ia A.C.
contact email	jose.elizalde@inecol.mx
dataset submitter

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PRIDE project URI

• PRIDE
  1. PXD047227
     1. Label: PRIDE project
     2. Name: Molecular and structural features of Hass Avocado’s peel as major modulators of its postharvest shelf life