PXD047063 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Protein turnover dynamics of IAV-infected HeLa cells |
Description | The abundance of a protein is defined by its continuous synthesis and degradation, a process known as protein turnover. Here, we systematically profiled the turnover of proteins in influenza A virus (IAV) infected cells using a pulse-chase SILAC-based approach combined with downstream statistical modeling. We identified 1414 virus-affected proteins with turnover changes (tVAPs) out of 7739 detected proteins. In particular, the affected proteins were involved in RNA transcription, splicing and nuclear transport, protein translation and stability, and energy metabolism. Many tVAPs are known IAV-interacting proteins that regulate virus propagation, such as KPNA6, PPP6C and POLR2A. Notably, our analysis identified novel IAV host and restriction factors, such as the splicing factor GPKOW, that exhibit significant turnover rate changes, while their total abundance is not affected. Overall, we show that protein turnover is a critical factor both for virus replication and antiviral defense. |
HostingRepository | PRIDE |
AnnounceDate | 2025-04-09 |
AnnouncementXML | Submission_2025-04-09_06:07:18.414.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Yiqi Huang |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | acetylated residue |
Instrument | Q Exactive HF |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2023-11-19 02:49:38 | ID requested | |
⏵ 1 | 2025-04-09 06:07:18 | announced | |
Publication List
Keyword List
submitter keyword: IAV, pulse-chase, SILAC, HeLa, protein turnover,LC-MSMS |
Contact List
Andreas Pichlmair |
contact affiliation | Institute of Virology - Viral Immunopathology, Faculty of Medicine, Technical University Munich |
contact email | andreas.pichlmair@tum.de |
lab head | |
Yiqi Huang |
contact affiliation | TUM |
contact email | yiqi.huang@tum.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD047063
- Label: PRIDE project
- Name: Protein turnover dynamics of IAV-infected HeLa cells