PXD046807 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Super-SILAC-based quantitative proteomic analysis of lung adenocarcinoma associated with stage and EGFR gene status |
Description | Lung adenocarcinoma (LUAD) is one of the most common causes of cancer death worldwide. Epidermal growth factor receptor (EGFR) mutations (MT) frequently target LUAD patients in Eastern Asia. EGFR tyrosine kinase inhibitors were developed to benefit LUAD patients harboring EGFR-activating MT. Unfortunately, biomarkers for early diagnosis and targeted therapy for patients with wild-type (WT) EGFR are currently lacking. Based on the super-SILAC, this study established a LUAD proteomics data set related to stage and EGFR status. Specifically, proteins obtained from three locally established LUAD cell lines were pooled with LUAD tissues from women, never smokers, different histological stages (early and late), and EGFR status (wild-type and mutant) to establish a quantitative proteome data set. We integrated genomic datasets and proteomic resources to select marker candidates for further characterization via immunohistochemistry and ELISA assays. The biological significance of marker candidates was examined using cell lines. This study provides new insights into the diagnosis and tumorigenesis of LUAD with EGFR-WT. |
HostingRepository | PRIDE |
AnnounceDate | 2025-06-05 |
AnnouncementXML | Submission_2025-06-05_06:25:29.715.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Chia-Jung Yu |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | No PTMs are included in the dataset |
Instrument | LTQ Orbitrap Elite |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2023-11-09 01:15:52 | ID requested | |
⏵ 1 | 2025-06-05 06:25:30 | announced | |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: lung adenocarcinoma, tissue proteome, super-SILAC, EGFR, cancer stage |
Contact List
Chia-Jung Yu |
contact affiliation | Department of Cell and Molecular Biology, College of Medicine, Chang Gung University, Taoyuan, Taiwan |
contact email | yucj1124@mail.cgu.edu.tw |
lab head | |
Chia-Jung Yu |
contact affiliation | Department of Cell and Molecular Biology, College of Medicine, Chang Gung University, Taoyuan, Taiwan |
contact email | yucj1124@mail.cgu.edu.tw |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/06/PXD046807 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD046807
- Label: PRIDE project
- Name: Super-SILAC-based quantitative proteomic analysis of lung adenocarcinoma associated with stage and EGFR gene status