PXD046375

PXD046375 is an original dataset announced via ProteomeXchange.

Title	Proteome-wide adaptation of Lactococcus cremoris during growth in milk and during cheese production and ripening
Description	The enzymatic repertoire of starter cultures is important for cheese characteristics but is challenging to characterize due to the high protein and fat concentration, and the semi-solid state of the cheese matrix. This study aimed to generate a protocol to characterize the proteome of bacteria harvested from milk and cheese, to assess the proteome differences between Lactococcus cremoris grown in milk and laboratory medium, and to investigate the proteome adaptation during cheese production and ripening.
HostingRepository	PRIDE
AnnounceDate	2025-03-12
AnnouncementXML	Submission_2025-03-12_06:07:18.191.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Sjef Boeren
SpeciesList	scientific name: Lactococcus lactis subsp. cremoris MG1363; NCBI TaxID: 416870;
ModificationList	S-carboxamidoethyl-L-cysteine; acetylated residue; monohydroxylated residue; deamidated residue
Instrument	Orbitrap Exploris 480; Q Exactive HF-X

Revision	Datetime	Status	ChangeLog Entry
0	2023-10-25 00:26:06	ID requested
⏵ 1	2025-03-12 06:07:19	announced

10.1016/j.fm.2024.104514;

van Olst B, Nugroho A, Boeren S, Vervoort J, Bachmann H, Kleerebezem M, Bacterial proteome adaptation during fermentation in dairy environments. Food Microbiol, 121():104514(2024) [pubmed]

submitter keyword: dairy fermentation, cheese production, starter cultures, Lactococcus cremoris, protein-rich food matrix,Milk

Sjef Boeren
contact affiliation	Wageningen University
contact email	sjef.boeren@wur.nl
lab head
Sjef Boeren
contact affiliation	Biochemistry
contact email	sjef.boeren@wur.nl
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/03/PXD046375

PRIDE project URI

• PRIDE
  1. PXD046375
     1. Label: PRIDE project
     2. Name: Proteome-wide adaptation of Lactococcus cremoris during growth in milk and during cheese production and ripening