PXD046211

PXD046211 is an original dataset announced via ProteomeXchange.

Title	Benchmarking of single cell proteomics data analysis workflows
Description	Single cell proteomics data containing quantitative information of THP1 and U937 monocytes that were treated or not to undergo a macrophage-like differentiation. Dataset also contains "Mix" samples generated by mixing in equal proportions THP1 and U937 peptides in the single-cell range or by processing together 1 THP1 cell and 1 U937 cell. Samples run on the Orbitrap Fusion Lumos Tribrid and the Exploris 240 were acquired by the de Duve institute, UCLouvain. Samples run on the timsTOF SCP were acquired by the GIGA institute, ULiège.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_06:28:25.808.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Samuel Grégoire
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Orbitrap Fusion Lumos; timsTOF SCP; Orbitrap Exploris 240

Revision	Datetime	Status	ChangeLog Entry
0	2023-10-18 08:14:32	ID requested
1	2024-02-02 09:50:22	announced
⏵ 2	2024-10-22 06:28:26	announced	2024-10-22: Updated project metadata.

10.48550/ARXIV.2310.13598;

submitter keyword: single cell, macrophage, benchmarking, monocyte, mix, SCP

Laurent Gatto
contact affiliation	CBIO, de Duve institute, UCLouvain, Belgium
contact email	laurent.gatto@uclouvain.be
lab head
Samuel Grégoire
contact affiliation	CBIO, de Duve institute, UCLouvain
contact email	samuel.gregoire@uclouvain.be
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/02/PXD046211

PRIDE project URI

• PRIDE
  1. PXD046211
     1. Label: PRIDE project
     2. Name: Benchmarking of single cell proteomics data analysis workflows