PXD046211 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Benchmarking of single cell proteomics data analysis workflows |
Description | Single cell proteomics data containing quantitative information of THP1 and U937 monocytes that were treated or not to undergo a macrophage-like differentiation. Dataset also contains "Mix" samples generated by mixing in equal proportions THP1 and U937 peptides in the single-cell range or by processing together 1 THP1 cell and 1 U937 cell. Samples run on the Orbitrap Fusion Lumos Tribrid and the Exploris 240 were acquired by the de Duve institute, UCLouvain. Samples run on the timsTOF SCP were acquired by the GIGA institute, ULiège. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_06:28:25.808.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Samuel Grégoire |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Orbitrap Fusion Lumos; timsTOF SCP; Orbitrap Exploris 240 |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2023-10-18 08:14:32 | ID requested | |
1 | 2024-02-02 09:50:22 | announced | |
⏵ 2 | 2024-10-22 06:28:26 | announced | 2024-10-22: Updated project metadata. |
Publication List
Keyword List
submitter keyword: single cell, macrophage, benchmarking, monocyte, mix, SCP |
Contact List
Laurent Gatto |
contact affiliation | CBIO, de Duve institute, UCLouvain, Belgium |
contact email | laurent.gatto@uclouvain.be |
lab head | |
Samuel Grégoire |
contact affiliation | CBIO, de Duve institute, UCLouvain |
contact email | samuel.gregoire@uclouvain.be |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/02/PXD046211 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD046211
- Label: PRIDE project
- Name: Benchmarking of single cell proteomics data analysis workflows