⮝ Full datasets listing

PXD046211

PXD046211 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleBenchmarking of single cell proteomics data analysis workflows
DescriptionSingle cell proteomics data containing quantitative information of THP1 and U937 monocytes that were treated or not to undergo a macrophage-like differentiation. Dataset also contains "Mix" samples generated by mixing in equal proportions THP1 and U937 peptides in the single-cell range or by processing together 1 THP1 cell and 1 U937 cell. Samples run on the Orbitrap Fusion Lumos Tribrid and the Exploris 240 were acquired by the de Duve institute, UCLouvain. Samples run on the timsTOF SCP were acquired by the GIGA institute, ULiège.
HostingRepositoryPRIDE
AnnounceDate2024-10-22
AnnouncementXMLSubmission_2024-10-22_06:28:25.808.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterSamuel Grégoire
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListacetylated residue; monohydroxylated residue; iodoacetamide derivatized residue
InstrumentOrbitrap Fusion Lumos; timsTOF SCP; Orbitrap Exploris 240
Dataset History
RevisionDatetimeStatusChangeLog Entry
02023-10-18 08:14:32ID requested
12024-02-02 09:50:22announced
22024-10-22 06:28:26announced2024-10-22: Updated project metadata.
Publication List
10.48550/ARXIV.2310.13598;
Keyword List
submitter keyword: single cell, macrophage, benchmarking, monocyte, mix, SCP
Contact List
Laurent Gatto
contact affiliationCBIO, de Duve institute, UCLouvain, Belgium
contact emaillaurent.gatto@uclouvain.be
lab head
Samuel Grégoire
contact affiliationCBIO, de Duve institute, UCLouvain
contact emailsamuel.gregoire@uclouvain.be
dataset submitter
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/02/PXD046211
PRIDE project URI
Repository Record List
[ + ]