PXD045853

PXD045853 is an original dataset announced via ProteomeXchange.

Title	Identification of RNA-binding proteins involved in Rice yellow mottle virus infection
Description	RNA-binding protein (RBP)-viral RNA interactions are essential for the viral life cycle and host cell. RNA viruses depend on host RBPs to accomplish their biological cycle; however, the compendium of RBPs involved in virus infection has remained poorly characterized. It has been demonstrated that susceptibility genes frequently physically interact with vRNA to exert their proviral function. Therefore, an RNA-bound proteome (RBPome)-wide identification of host RBPs enriched under virus-infected conditions could point toward candidate S-genes. Here, we used a Silica-based Acidic Phase Separation approach to elucidate RBPome changes following Rice yellow mottle virus infection.
HostingRepository	PRIDE
AnnounceDate	2025-06-17
AnnouncementXML	Submission_2025-06-16_23:25:39.908.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD045853
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Sara Dufour
SpeciesList	scientific name: Oryza sativa Indica Group x Oryza nivara; NCBI TaxID: 311553;
ModificationList	No PTMs are included in the dataset
Instrument	Q Exactive HF

Revision	Datetime	Status	ChangeLog Entry
0	2023-10-02 07:18:29	ID requested
⏵ 1	2025-06-16 23:25:40	announced

10.1002/pld3.70077;

Odongo PJ, Van Ende R, Balzarini S, Onaga G, Alicai T, Geuten K, RNA-Binding Proteome-Wide Analysis Reveals Rice RNA-Binding Proteins Enriched After Sobemovirus Rice Yellow Mottle Virus Infection. Plant Direct, 9(5):e70077(2025) [pubmed]

10.6019/PXD045853;

submitter keyword: LC-MSMS, RBPS, SAPS,Viruses, RYMV, RBPome

Koen Geuten
contact affiliation	KU Leuven; Department of Biology; Unit: Molecular Biotechnology of Plants and Micro-Organisms: Rice
contact email	koen.geuten@kuleuven.be
lab head
Sara Dufour
contact affiliation	VIB-UGent
contact email	sara.dufour@vib-ugent.be
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/06/PXD045853

PRIDE project URI

• PRIDE
  1. PXD045853
     1. Label: PRIDE project
     2. Name: Identification of RNA-binding proteins involved in Rice yellow mottle virus infection