PXD045801 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | A YTHDF-PABP axis is required for m6A-mediated organogenesis in plants |
Description | N6-methyladenosine (m6A) in mRNA is key to eukaryotic gene regulation. Many m6A functions involve RNA-binding proteins that recognize m6A via a YT521-B Homology (YTH) domain. YTH domain proteins contain long intrinsically disordered regions (IDRs) that may mediate phase separation and interaction with protein partners, but whose precise biochemical functions remain largely unknown. The Arabidopsis thaliana YTH domain proteins ECT2, ECT3 and ECT4 accelerate organogenesis through stimulation of cell division in organ primordia. Here, we use ECT2 to reveal molecular underpinnings of this function. We show that stimulation of leaf formation requires the long N-terminal IDR, and we identify two short IDR-elements required for ECT2-mediated organogenesis. Of these two, a 19-amino acid region containing a tyrosine-rich motif conserved in both plant and metazoan YTHDF proteins is necessary for binding to the major cytoplasmic poly(A)-binding proteins PAB2, PAB4 and PAB8. Remarkably, overexpression of PAB4 in leaf primordia partially rescues the delayed leaf formation in ect2 ect3 ect4 mutants, suggesting that the ECT2-PAB2/4/8 interaction on target mRNAs of organogenesis-related genes may overcome limiting PAB concentrations in primordial cells. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_06:16:28.625.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Mathias Tankmar |
SpeciesList | scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: 3702; |
ModificationList | acetylated residue |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2023-09-29 00:49:52 | ID requested | |
1 | 2023-11-28 05:29:05 | announced | |
⏵ 2 | 2024-10-22 06:16:29 | announced | 2024-10-22: Updated project metadata. |
Publication List
10.15252/embr.202357741; |
Due Tankmar M, Reichel M, Arribas-Hern, รก, ndez L, Brodersen P, A-mediated organogenesis in plants. EMBO Rep, 24(12):e57741(2023) [pubmed] |
Keyword List
submitter keyword: Arabidopsis, Plants,m6A, ECT2 |
Contact List
Peter Brodersen |
contact affiliation | Department of Computational and RNA Biology, Copenhagen University, Denmark |
contact email | pbrodersen@bio.ku.dk |
lab head | |
Mathias Tankmar |
contact affiliation | Copenhagen University |
contact email | mathias.tankmar@bio.ku.dk |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD045801
- Label: PRIDE project
- Name: A YTHDF-PABP axis is required for m6A-mediated organogenesis in plants