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PXD045417

PXD045417 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleProteogenomic Analysis of Enriched Tumor Epithelium Identifies Prognostic Signatures and an Increased Dependency of Homologous Recombination Proficient Cells on BMI1 in High Grade Serous Ovarian Cancer
DescriptionAlthough several proteogenomic analyses of high-grade serous ovarian cancer (HGSOC) have been conducted, these analyses are often dominated by tissues with high levels of tumor cell nuclei (purity), despite low purity being associated with worse outcome. We performed deep proteogenomic profiling of bulk tumor (BT) and laser microdissection (LMD) enriched tumor (ET) and stromal (ST) cell populations from 70 HGSOC patient tumors spanning a broad spectrum of purity. We identified a cluster of patients with longer progression free survival associated with increased immune signatures and validated proteins correlating with tumor infiltrating lymphocytes (TILs) in 65 tumors collected from an independent cohort of 12 HGSOC patients, as well as with overall survival in an additional cohort of 126 HGSOC patients. We identified that homologous recombination deficient (HRD) tumors express transcriptomic and proteomic pathways associated with metabolism and oxidative phosphorylation that we validated in independent patient cohorts, including 69 HRD-positive HGSOC tumors. In summary, our proteogenomic analysis provides important new clinically relevant insights into HGSOC tumor cell populations, and have uncovered prognostic proteogenomic alterations correlating with TILs, low tumor purity, as well as expression alterations associated with HRD status and immune infiltration.
HostingRepositoryPRIDE
AnnounceDate2024-03-16
AnnouncementXMLSubmission_2024-03-16_01:43:29.562.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterThomas Conrads
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListmonohydroxylated residue
InstrumentQ Exactive HF-X
Dataset History
RevisionDatetimeStatusChangeLog Entry
02023-09-15 07:29:36ID requested
12024-03-16 01:43:30announced
Publication List
10.1038/S41698-024-00519-8;
Keyword List
submitter keyword: APOLLO, ovarian cancer,proteogenomics, homologous recombination deficiency
Contact List
Thomas P.
contact affiliationDirector of Women’s Health Research Women’s Service Line Inova Health System
contact emailconrads@whirc.org
lab head
Thomas Conrads
contact affiliationInova Health System
contact emailconrads@whirc.org
dataset submitter
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Dataset FTP location
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