PXD045349

PXD045349 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Low-melting point agarose as embedding medium for MALDI mass spectrometry imaging and laser-capture microdissection-based proteomics
Description	We report an investigation of low-temperature embedding media in terms of their mechanical properties and embedding temperature, with the goal of determining a reliable embedding medium for the combination of MALDI MSI of lipids, laser-capture microdissection of tissue regions, and quantitative proteomics. We compared embedded and non-embedded tissues to ensure that the embedding media did not interfere with the analysis.
HostingRepository	PRIDE
AnnounceDate	2024-01-26
AnnouncementXML	Submission_2024-01-26_07:00:39.501.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Francesco Greco
SpeciesList	scientific name: Mus musculus (Mouse); NCBI TaxID: 10090;
ModificationList	iodoacetamide derivatized residue
Instrument	Q Exactive HF; Orbitrap Fusion

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2023-09-13 05:58:56	ID requested
⏵ 1	2024-01-26 07:00:40	announced

Publication List

Greco F, Pardini LF, Botto A, McDonnell LA, Low-melting point agarose as embedding medium for MALDI mass spectrometry imaging and laser-capture microdissection-based proteomics. Sci Rep, 13(1):18678(2023) [pubmed]
10.1038/s41598-023-45799-5;

Greco F, Pardini LF, Botto A, McDonnell LA, Low-melting point agarose as embedding medium for MALDI mass spectrometry imaging and laser-capture microdissection-based proteomics. Sci Rep, 13(1):18678(2023) [pubmed]

10.1038/s41598-023-45799-5;

Keyword List

submitter keyword: proteomics, laser-capture microdissection, MALDI MSI,Embedding media

submitter keyword: proteomics, laser-capture microdissection, MALDI MSI,Embedding media

Contact List

Liam Andrew McDonnell
contact affiliation	Fondazione Pisana per la Scienza, Pisa, Italy
contact email	l.a.mcdonnell@outlook.com
lab head
Francesco Greco
contact affiliation	Fondazione Toscana Gabriele Monasterio
contact email	f.greco@fpscience.it
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/01/PXD045349
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/01/PXD045349

PRIDE project URI

Repository Record List

[ + ]