PXD044520

PXD044520 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	In vivo expression of chicken gut anaerobes
Description	Complex gut microbiota increases chicken resistance to enteric diseases. However, the principles of this phenomenon are not understood in detail. One of the possibilities how to decipher the role of gut microbiota in chicken resistance to enteric pathogens is to gradually characterise gene expression of individual gut microbiota members when colonising chicken caecum. To reach this aim, newly hatched chicks were inoculated with bacterial species with known whole genomic sequence. Total protein purified from the chicken caecum was analysed by mass spectrometry and obtained spectra were searched against strain-specific protein databases generated from known genomic sequences.
HostingRepository	PRIDE
AnnounceDate	2026-08-13
AnnouncementXML	Submission_2026-08-13_10:05:09.376.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Michal Zeman
SpeciesList	scientific name: Gallus gallus (Chicken); NCBI TaxID: NEWT:9031;
ModificationList	acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap Velos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2023-08-11 19:58:33	ID requested
⏵ 1	2026-08-13 10:05:12	announced

Publication List

Rajova J, Zeman M, Seidlerova Z, Vlasatikova L, Matiasovicova J, Sebkova A, Faldynova M, Prikrylova H, Karasova D, Crhanova M, Kulich P, Babak V, Volf J, Rychlik I, In Vivo Expression of Chicken Gut Anaerobes Identifies Carbohydrate- or Amino Acid-Utilising, Motile or Type VI Secretion System-Expressing Bacteria. Int J Mol Sci, 25(12):(2024) [pubmed]
10.3390/ijms25126505;

Rajova J, Zeman M, Seidlerova Z, Vlasatikova L, Matiasovicova J, Sebkova A, Faldynova M, Prikrylova H, Karasova D, Crhanova M, Kulich P, Babak V, Volf J, Rychlik I, In Vivo Expression of Chicken Gut Anaerobes Identifies Carbohydrate- or Amino Acid-Utilising, Motile or Type VI Secretion System-Expressing Bacteria. Int J Mol Sci, 25(12):(2024) [pubmed]

10.3390/ijms25126505;

Keyword List

submitter keyword: chicken, in vivo, motility, T6SS, anaerobes

submitter keyword: chicken, in vivo, motility, T6SS, anaerobes

Contact List

Ivan Rychlik
contact affiliation	Veterinary research institute, Brno, Czech republic
contact email	ivan.rychlik@vri.cz
lab head
Michal Zeman
contact affiliation	Veterinary Research Institute
contact email	michal.zeman@vri.cz
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2026/08/PXD044520
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2026/08/PXD044520

PRIDE project URI

Repository Record List

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