PXD044450

PXD044450 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Using FAIMS to improve tumor neoantigen detection
Description	DDA and PRM analysis, with and without FAIMS, for the T3, F244, and 1956 MCA sarcoma cell lines. PRM analysis of MHC-I neoantigens in ex vivo mouse tumors.
HostingRepository	MassIVE
AnnounceDate	2024-05-31
AnnouncementXML	Submission_2024-05-31_07:09:34.192.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Cheryl Lichti
SpeciesList	scientific name: Mus musculus; common name: house mouse; NCBI TaxID: 10090;
ModificationList	L-methionine sulfoxide; Deamidated
Instrument	Orbitrap Fusion Lumos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2023-08-08 07:33:36	ID requested
⏵ 1	2024-05-31 07:09:34	announced

Publication List

Meng W, Takeuchi Y, Ward JP, Sultan H, Arthur CD, Mardis ER, Artyomov MN, Lichti CF, Schreiber RD, Improvement of Tumor Neoantigen Detection by High-Field Asymmetric Waveform Ion Mobility Mass Spectrometry. Cancer Immunol Res, 12(8):988-1006(2024) [pubmed]

Meng W, Takeuchi Y, Ward JP, Sultan H, Arthur CD, Mardis ER, Artyomov MN, Lichti CF, Schreiber RD, Improvement of Tumor Neoantigen Detection by High-Field Asymmetric Waveform Ion Mobility Mass Spectrometry. Cancer Immunol Res, 12(8):988-1006(2024) [pubmed]

Keyword List

submitter keyword: immunopeptidomics

submitter keyword: immunopeptidomics

Contact List

Robert Schreiber
contact affiliation	Washington University in St. Louis
contact email	rdschreiber@wustl.edu
lab head
Cheryl Lichti
contact affiliation	Washington University in St. Louis
contact email	clichti@wustl.edu
lab head
Cheryl Lichti
contact affiliation	Washington University in St. Louis
contact email	clichti@wustl.edu
dataset submitter

Full Dataset Link List

MassIVE dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/v06/MSV000092617/

MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/v06/MSV000092617/