PXD044305 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Proteomics of groundwater microbiomes collected from five wells in Alberta, Canada |
Description | Groundwater samples were collected from five wells in Alberta, Canada. The sampling location and time are indicated in the table below. 13 to 29 genomes were assembled from each metagenome. Proteomic analyses were performed to investigate which genomes and genes were expressed in each well. Sample ID Location Latitude (NAD 83) Longitude (NAD 83) Sampling date 19GWC19026 218 Cluny 50.85 -112.84 30/07/2019 19GWC19028 114 Ross Creek 49.99 -110.46 31/07/2019 19GWC19045 265 Metiskow 52.42 -110.61 18/09/2019 19GWE00050 991 Cynthia 56.22 -117.81 04/09/2019 19GWE00515 33 Fort McMurray 56.98 -111.85 17/09/2019 |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_06:40:38.397.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Angela Kouris |
SpeciesList | scientific name: uncultured Methylotenera sp.; NCBI TaxID: 429431; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2023-08-02 13:16:25 | ID requested | |
1 | 2024-05-21 12:15:51 | announced | |
⏵ 2 | 2024-10-22 06:40:43 | announced | 2024-10-22: Updated project metadata. |
Publication List
Li S, Mosier D, Kouris A, Humez P, Mayer B, Strous M, Diao M, High diversity, abundance, and expression of hydrogenases in groundwater. ISME Commun, 4(1):ycae023(2024) [pubmed] |
10.1093/ismeco/ycae023; |
Keyword List
submitter keyword: metaproteomics, metagenome-assembled-genomes, metaproteome, groundwater |
Contact List
Marc Strous |
contact affiliation | University of Calgary |
contact email | mstrous@ucalgary.ca |
lab head | |
Angela Kouris |
contact affiliation | University of Calgary |
contact email | angela.kouris@ucalgary.ca |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD044305
- Label: PRIDE project
- Name: Proteomics of groundwater microbiomes collected from five wells in Alberta, Canada