PXD044305

PXD044305 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Proteomics of groundwater microbiomes collected from five wells in Alberta, Canada
Description	Groundwater samples were collected from five wells in Alberta, Canada. The sampling location and time are indicated in the table below. 13 to 29 genomes were assembled from each metagenome. Proteomic analyses were performed to investigate which genomes and genes were expressed in each well. Sample ID Location Latitude (NAD 83) Longitude (NAD 83) Sampling date 19GWC19026 218 Cluny 50.85 -112.84 30/07/2019 19GWC19028 114 Ross Creek 49.99 -110.46 31/07/2019 19GWC19045 265 Metiskow 52.42 -110.61 18/09/2019 19GWE00050 991 Cynthia 56.22 -117.81 04/09/2019 19GWE00515 33 Fort McMurray 56.98 -111.85 17/09/2019
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_06:40:38.397.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Angela Kouris
SpeciesList	scientific name: uncultured Methylotenera sp.; NCBI TaxID: 429431;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2023-08-02 13:16:25	ID requested
1	2024-05-21 12:15:51	announced
⏵ 2	2024-10-22 06:40:43	announced	2024-10-22: Updated project metadata.

Publication List

Li S, Mosier D, Kouris A, Humez P, Mayer B, Strous M, Diao M, High diversity, abundance, and expression of hydrogenases in groundwater. ISME Commun, 4(1):ycae023(2024) [pubmed]
10.1093/ismeco/ycae023;

Li S, Mosier D, Kouris A, Humez P, Mayer B, Strous M, Diao M, High diversity, abundance, and expression of hydrogenases in groundwater. ISME Commun, 4(1):ycae023(2024) [pubmed]

10.1093/ismeco/ycae023;

Keyword List

submitter keyword: metaproteomics, metagenome-assembled-genomes, metaproteome, groundwater

submitter keyword: metaproteomics, metagenome-assembled-genomes, metaproteome, groundwater

Contact List

Marc Strous
contact affiliation	University of Calgary
contact email	mstrous@ucalgary.ca
lab head
Angela Kouris
contact affiliation	University of Calgary
contact email	angela.kouris@ucalgary.ca
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/05/PXD044305
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/05/PXD044305

PRIDE project URI

Repository Record List

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