PXD044301

PXD044301 is an original dataset announced via ProteomeXchange.

Title	WELFARE OF RAINBOW TROUT AT SLAUGHTER: INTEGRATING BEHAVIOURAL, PHYSIOLOGICAL, PROTEOMIC AND QUALITY INDICATORS
Description	This study compared the brain proteome response of fish submitted to cold shock by fast-chilling (FC) as a novel stunning method (with fish immersed in liquid water at -8ºC), asphyxia (ASP) (as the currently used method), electrical stunning (ES) and anaesthesia (AN) with MS-222, by integrating it with physiological, behavioural and quality welfare indicators. Fish trials were conducted in triplicate tanks and two fish per tank were randomly sampled for MS analysis. One of the objectives of this integrative work was to disclose most significant changes in the brain proteome of rainbow trout (O. mykiss) subjected to four types of stunning methods that could help to elucidate about welfare standards.
HostingRepository	PRIDE
AnnounceDate	2024-01-10
AnnouncementXML	Submission_2024-01-10_12:10:19.326.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD044301
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Ana Paula Farinha
SpeciesList	scientific name: Oncorhynchus mykiss (Rainbow trout) (Salmo gairdneri); NCBI TaxID: 8022;
ModificationList	acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive HF

Revision	Datetime	Status	ChangeLog Entry
0	2023-08-02 06:57:05	ID requested
⏵ 1	2024-01-10 12:10:19	announced

10.1016/J.AQUACULTURE.2023.740443;

10.6019/PXD044301;

submitter keyword: fish welfare, brain, shotgun proteomics,Oncorhynchus mykiss, farmed fish

Marco A. Cerqueira (Project responsible), Pedro M. Rodrigues
contact affiliation	Centre of Marine Sciences (CCMAR), Portugal University of Algarve (UAlg), Portugal
contact email	macerqueira@ualg.pt
lab head
Ana Paula Farinha
contact affiliation	Universidade Algarve
contact email	apaula.farinha@gmail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/01/PXD044301

PRIDE project URI

• PRIDE
  1. PXD044301
     1. Label: PRIDE project
     2. Name: WELFARE OF RAINBOW TROUT AT SLAUGHTER: INTEGRATING BEHAVIOURAL, PHYSIOLOGICAL, PROTEOMIC AND QUALITY INDICATORS