PXD044222
PXD044222 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Performance evaluation of DeepRTAlign using 293T-E.coli mixture datasets |
| Description | 10 μg 293T was spiked with different amounts ( 0.2, 0.3, 0.4, 0.5 μg) of E.coli. Performed the ablation analysis to evaluate the DNN model in DeepRTAlign. Compared DeepRTAlign with Quandenser. Compared DeepRTAlign with MaxQuant’s MBR and FragPipe’s MBR. Generalizability evaluation on simulated datasets. |
| HostingRepository | iProX |
| AnnounceDate | 2023-07-31 |
| AnnouncementXML | Submission_2023-12-17_21:05:29.851.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Unsupported dataset by repository |
| PrimarySubmitter | Yun Yang |
| SpeciesList | scientific name: Homo sapiens; NCBI TaxID: 9606; scientific name: Escherichia coli; NCBI TaxID: 562; |
| ModificationList | No PTMs are included in the dataset |
| Instrument | Orbitrap Exploris 480 |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2023-07-31 07:35:32 | ID requested | |
| ⏵ 1 | 2023-12-17 21:05:30 | announced |
Publication List
| Liu Y, Yang Y, Chen W, Shen F, Xie L, Zhang Y, Zhai Y, He F, Zhu Y, Chang C, DeepRTAlign: toward accurate retention time alignment for large cohort mass spectrometry data analysis. Nat Commun, 14(1):8188(2023) [pubmed] |
Keyword List
| submitter keyword: DeepRTAlign, Performance evaluation |
Contact List
| Cheng Chang | |
|---|---|
| contact affiliation | State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing) |
| contact email | changchengbio@163.com |
| lab head | |
| Yun Yang | |
| contact affiliation | South China Institute of Biomedicine |
| contact email | yangyunwww@126.com |
| dataset submitter | |
Full Dataset Link List
| iProX dataset URI |
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