PXD043997

PXD043997 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	High-Intensity Comparative and Quantitative Proteomics of Histamine-Forming and Other Biogenic Amine-Producing Bacteria Present in Seafood
Description	This article describes a shotgun quantitative proteomics strategy to evaluate and compare foodborne strains of bacteria that produce biogenic amines.
HostingRepository	PRIDE
AnnounceDate	2025-05-06
AnnouncementXML	Submission_2025-05-06_07:39:42.448.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD043997
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Mónica Carrera
SpeciesList	scientific name: Proteus vulgaris; NCBI TaxID: 585; scientific name: Providencia rettgeri; NCBI TaxID: 587; scientific name: Proteus mirabilis BB2000; NCBI TaxID: 1266738; scientific name: Enterobacter sp. T3; NCBI TaxID: 640459; scientific name: Klebsiella pneumoniae KP-1; NCBI TaxID: 1365186; scientific name: Klebsiella oxytoca NBRC 105695; NCBI TaxID: 1218097; scientific name: Providencia stuartii; NCBI TaxID: 588; scientific name: Hafnia alvei; NCBI TaxID: 569;
ModificationList	monohydroxylated residue
Instrument	LTQ Orbitrap Elite

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2023-07-21 18:19:28	ID requested
⏵ 1	2025-05-06 07:39:43	announced

Publication List

10.1021/acs.jafc.3c06607;
Abril AG, Calo-Mata P, Villa TG, B, ö, hme K, Barros-Vel, á, zquez J, S, á, nchez-P, é, rez Á, Pazos M, Carrera M, High-Resolution Comparative and Quantitative Proteomics of Biogenic-Amine-Producing Bacteria and Virulence Factors Present in Seafood. J Agric Food Chem, 72(8):4448-4463(2024) [pubmed]
10.6019/PXD043997;

10.1021/acs.jafc.3c06607;

Abril AG, Calo-Mata P, Villa TG, B, ö, hme K, Barros-Vel, á, zquez J, S, á, nchez-P, é, rez Á, Pazos M, Carrera M, High-Resolution Comparative and Quantitative Proteomics of Biogenic-Amine-Producing Bacteria and Virulence Factors Present in Seafood. J Agric Food Chem, 72(8):4448-4463(2024) [pubmed]

10.6019/PXD043997;

Keyword List

submitter keyword: Biogenic amine, bacteria, shotgun quantitative proteomics, fish, bacterial detection, LC-MS/MS

submitter keyword: Biogenic amine, bacteria, shotgun quantitative proteomics, fish, bacterial detection, LC-MS/MS

Contact List

Monica Carrera
contact affiliation	IIM-CSIC
contact email	mcarrera@iim.csic.es
lab head
Mónica Carrera
contact affiliation	CSIC
contact email	mcarrera@iim.csic.es
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/05/PXD043997
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/05/PXD043997

PRIDE project URI

Repository Record List

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