PXD043702

PXD043702 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Silver carp (Hypophthalmichthys molitrix) dorsal muscle LC-MSMS data
Description	China produces more than 77.9% of the world's production of silver carp in 2020 with the production of 3812.9 kiloton.3 The high consumption of silver carp in China is mainly by using its edible muscles for manufacture of surimi-based seafoods or other muscle foods, which may contribute high quality protein resource and other valuable nutrients in human diets. This project is to understanding the muscle composition of slaughtered fish skeletal muscle use the proteomics methods. The proteomics was performed based on the improved DDA experiment with extensive fractionation and prolonged separation of peptides, and protein searching database was informed by the Iso-seq transcriptomics.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_06:27:22.228.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Xidong Jiao
SpeciesList	scientific name: Hypophthalmichthys molitrix; NCBI TaxID: 13095;
ModificationList	No PTMs are included in the dataset
Instrument	timsTOF Pro 2

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2023-07-12 02:22:52	ID requested
1	2024-01-26 10:30:24	announced
⏵ 2	2024-10-22 06:27:23	announced	2024-10-22: Updated project metadata.

Publication List

Jiao X, Li X, Zhang N, Zhang W, Yan B, Huang J, Zhao J, Zhang H, Chen W, Fan D, ): Insights from Full-Length Transcriptome and Deep 4D Label-Free Proteomic. J Agric Food Chem, 72(2):1376-1390(2024) [pubmed]
10.1021/acs.jafc.3c06902;

Jiao X, Li X, Zhang N, Zhang W, Yan B, Huang J, Zhao J, Zhang H, Chen W, Fan D, ): Insights from Full-Length Transcriptome and Deep 4D Label-Free Proteomic. J Agric Food Chem, 72(2):1376-1390(2024) [pubmed]

10.1021/acs.jafc.3c06902;

Keyword List

submitter keyword: Silver carp, Tims-TOF pro, 4D-proteomics, muscle

submitter keyword: Silver carp, Tims-TOF pro, 4D-proteomics, muscle

Contact List

Daming Fan, Xidong Jiao
contact affiliation	School of Food Science and Technology, Jiangnan University, Wuxi 214122, China;
contact email	jiangnan_jxdong@163.com
lab head
Xidong Jiao
contact affiliation	Jiangnan University
contact email	jiangnan_jxdong@163.com
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/01/PXD043702
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/01/PXD043702

PRIDE project URI

Repository Record List

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