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PXD043291

PXD043291 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleDissecting ubiquitylation and DNA damage response pathways in the yeast Saccharomyces cerevisiae using a proteome-wide approach
DescriptionThe proper function of DNA damage response pathways (DDR) is essential to protect eukaryotic cells from the accumulation of DNA damage and genome instability, a major cause of cancer and other diseases in humans. Ubiquitylation orchestrates the regulation of DDR events.Blaszczak et al. use quantitative proteomics and a reporter system based on the NanoLuc luciferase to study ubiquitylation and protein abundance changes upon genotoxic stress in yeast. The authors point out proteins that may be regulated by ubiquitylation during the DDR.
HostingRepositoryPRIDE
AnnounceDate2024-10-08
AnnouncementXMLSubmission_2024-10-08_11:15:14.802.xml
DigitalObjectIdentifierhttps://dx.doi.org/10.6019/PXD043291
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportSupported dataset by repository
PrimarySubmitterEwa Blaszczak
SpeciesList scientific name: Saccharomyces cerevisiae (Baker's yeast); NCBI TaxID: 4932;
ModificationList6x(13)C labeled residue
Instrument6220 Time-of-Flight LC/MS; MALDI Synapt MS; Synapt MS; Q Exactive HF; LCQ Classic; TripleTOF 5600; 6410 Triple Quadrupole LC/MS; Q Exactive; LTQ Orbitrap; 4800 Proteomics Analyzer; 6340 Ion Trap LC/MS; Orbitrap Fusion Lumos; LTQ; LTQ Orbitrap Velos; Q TRAP; Q-Tof Ultima; maXis; LTQ FT; autoflex; ultraflex; QSTAR; 4700 Proteomics Analyzer; Orbitrap Fusion; 6520A Quadrupole Time-of-Flight LC/MS; LTQ Orbitrap Elite
Dataset History
RevisionDatetimeStatusChangeLog Entry
02023-06-26 01:46:48ID requested
12024-10-08 11:15:15announced
Publication List
10.6019/PXD043291;
10.1016/J.MCPRO.2023.100695;
Keyword List
submitter keyword: ubiquitylation, IMAC, NanoLuc, qunatitative proteomics, anchor-away, degradation, SILAC, proteasome, MMS, genotoxic stress,ubiquitin, DNA damage response
Contact List
Ewa Blaszczak
contact affiliationDepartment of Biochemistry and Molecular Biology, Faculty of Medical Sciences, Medical University of Lublin
contact emailewa.blaszczak1@umlub.pl
lab head
Ewa Blaszczak
contact affiliationDepartment of Biochemistry and Molecular Biology, Faculty of Medical Sciences, Medical University of Lublin
contact emailewa.blaszczak1@umlub.pl
dataset submitter
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Dataset FTP location
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