PXD043218 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Results from a Multi-Laboratory Ocean Metaproteomic Intercomparison: Effects of LC-MS Acquisition and Data Analysis Procedures |
Description | Metaproteomics is an increasingly popular methodology that provides information regarding the metabolic functions of specific microbial taxa and can be used to assess environmental stressors and change and has potential for contributing to ocean ecology and biogeochemical studies. To enable future large-scale studies, a multi-laboratory intercomparison was conducted to assess comparability and reproducibility of taxonomic and functional results and their sensitivity to methodological variables. This ocean metaproteomic intercomparison consisted of two major activities: a laboratory component, where independent labs processed identical ocean samples simultaneously collected from the North Atlantic Ocean , and a subsequent informatic component. |
HostingRepository | PRIDE |
AnnounceDate | 2024-05-30 |
AnnouncementXML | Submission_2024-05-30_12:56:33.186.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD043218 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Matthew McIlvin |
SpeciesList | scientific name: Bacteria; NCBI TaxID: NCBITaxon:2; scientific name: environmental samples |
ModificationList | acetylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive HF; Orbitrap Fusion Lumos; Q Exactive; Orbitrap Fusion |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2023-06-22 15:55:33 | ID requested | |
⏵ 1 | 2024-05-30 12:56:33 | announced | |
Publication List
Keyword List
submitter keyword: marine,metaproteomics, proteomics, LC-MS, intercomparison, ocean, LCMS |
Contact List
Mak Saito |
contact affiliation | Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution |
contact email | msaito@whoi.edu |
lab head | |
Matthew McIlvin |
contact affiliation | Woods Hole Oceanographic Inst. |
contact email | mmcilvin@whoi.edu |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD043218
- Label: PRIDE project
- Name: Results from a Multi-Laboratory Ocean Metaproteomic Intercomparison: Effects of LC-MS Acquisition and Data Analysis Procedures