PXD043180 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Temperature (20-28ºC) and nutrient stress (N- and P-stress) on Synechococcus WH8102 |
Description | Cultures of Synechococcus (WH8102) were grown in polycarbonate bottles with a continuous culturing method with an artificial seawater medium. The experimental design included two concentration ratios of macronutrients (NO3-:PO43- = 1.7 and 80) and 3 levels of temperature (20, 24 and 28°C). Light was supplied with white fluorescent lamps at ~125 umol quanta m-2 s-1 on a 12h:12h light:dark cycle. Cultures were stable 38 days after initiation and cells were collected on days 38, 43, 47, 50 and 57 for particulate organic matter, nutrient analysis and cellular proteins. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_06:45:43.652.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Matthew McIlvin |
SpeciesList | scientific name: Bacteria; NCBI TaxID: NCBITaxon:2; scientific name: Synechococcus sp. WH 8012; NCBI TaxID: 166313; |
ModificationList | acetylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2023-06-21 14:54:25 | ID requested | |
1 | 2024-06-16 01:16:37 | announced | |
⏵ 2 | 2024-10-22 06:45:44 | announced | 2024-10-22: Updated project metadata. |
Publication List
10.1093/ismejo/wrae046; |
Garcia NS, Du M, Guindani M, McIlvin MR, Moran DM, Saito MA, Martiny AC, Proteome trait regulation of marine Synechococcus elemental stoichiometry under global change. ISME J, 18(1):(2024) [pubmed] |
Keyword List
submitter keyword: Synechococcus WH8102, environmental, LCMSMS |
Contact List
Mak Saito |
contact affiliation | Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution |
contact email | msaito@whoi.edu |
lab head | |
Matthew McIlvin |
contact affiliation | Woods Hole Oceanographic Inst. |
contact email | mmcilvin@whoi.edu |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/06/PXD043180 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD043180
- Label: PRIDE project
- Name: Temperature (20-28ºC) and nutrient stress (N- and P-stress) on Synechococcus WH8102