PXD043180

PXD043180 is an original dataset announced via ProteomeXchange.

Title	Temperature (20-28ºC) and nutrient stress (N- and P-stress) on Synechococcus WH8102
Description	Cultures of Synechococcus (WH8102) were grown in polycarbonate bottles with a continuous culturing method with an artificial seawater medium. The experimental design included two concentration ratios of macronutrients (NO3-:PO43- = 1.7 and 80) and 3 levels of temperature (20, 24 and 28°C). Light was supplied with white fluorescent lamps at ~125 umol quanta m-2 s-1 on a 12h:12h light:dark cycle. Cultures were stable 38 days after initiation and cells were collected on days 38, 43, 47, 50 and 57 for particulate organic matter, nutrient analysis and cellular proteins.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_06:45:43.652.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Matthew McIlvin
SpeciesList	scientific name: Bacteria; NCBI TaxID: NCBITaxon:2; scientific name: Synechococcus sp. WH 8012; NCBI TaxID: 166313;
ModificationList	acetylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2023-06-21 14:54:25	ID requested
1	2024-06-16 01:16:37	announced
⏵ 2	2024-10-22 06:45:44	announced	2024-10-22: Updated project metadata.

10.1093/ismejo/wrae046;

Garcia NS, Du M, Guindani M, McIlvin MR, Moran DM, Saito MA, Martiny AC, Proteome trait regulation of marine Synechococcus elemental stoichiometry under global change. ISME J, 18(1):(2024) [pubmed]

submitter keyword: Synechococcus WH8102, environmental, LCMSMS

Mak Saito
contact affiliation	Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution
contact email	msaito@whoi.edu
lab head
Matthew McIlvin
contact affiliation	Woods Hole Oceanographic Inst.
contact email	mmcilvin@whoi.edu
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/06/PXD043180

PRIDE project URI

• PRIDE
  1. PXD043180
     1. Label: PRIDE project
     2. Name: Temperature (20-28ºC) and nutrient stress (N- and P-stress) on Synechococcus WH8102