PXD043028
PXD043028 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Zhao_DNADamageTurboID_P36_5600 |
| Description | This dataset consists of 12 raw MS files and associated peak lists and results files, acquired on AB Sciex TripleTOF 5600 mass spectrometer operated in Data Dependent Acquisition mode. Samples were generated by Yichao Zhao. Immunoprecipitation and mass spectrometry acquisition was performed by Zhen-Yuan Lin. Analysis was performed by Yichao Zhao, Zhen-Yuan Lin, Anne-Claude Gingras and Daniel Durocher. The files are associated with a manuscript submitted for publication by Yichao Zhao et al. The main goal of this paper was to identify genes that suppress DNA damage in human cells. This dataset comprehensively maps the interactome of GNB1L using proximity labeling coupled to affinity purification. Daniel Durocher is the corresponding author of the manuscript (durocher@lunenfeld.ca); Anne-Claude Gingras should be contacted for questions on this dataset (gingras@lunenfeld.ca) This submission is associated with 3 Supplementary Files (in addition to this README file) Table 1 describes the composition of this dataset Table 2 lists all the peptide identification evidence (as per iProphet) Table 3 lists the SAINTexpress interactions |
| HostingRepository | MassIVE |
| AnnounceDate | 2023-06-16 |
| AnnouncementXML | Submission_2023-06-16_04:56:38.153.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Non peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Supported dataset by repository |
| PrimarySubmitter | Gingras Lab |
| SpeciesList | scientific name: Homo sapiens; common name: human; NCBI TaxID: 9606; |
| ModificationList | deamidated L-asparagine; deamidated L-glutamine; L-methionine sulfoxide |
| Instrument | TripleTOF 5600 |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2023-06-15 10:35:02 | ID requested | |
| ⏵ 1 | 2023-06-16 04:56:38 | announced |
Publication List
| no publication |
Keyword List
| submitter keyword: Affinity purification, BioID, DNA damage, GNB1L |
Contact List
| Anne-Claude Gingras | |
|---|---|
| contact affiliation | LTRI |
| contact email | gingras@lunenfeld.ca |
| lab head | |
| Gingras Lab | |
| contact affiliation | Samuel Lunenfeld Research Institute |
| contact email | gingras@mshri.on.ca |
| dataset submitter | |
Full Dataset Link List
| MassIVE dataset URI |
| Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000092177/ |
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