PXD042826 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Quantitative ChIP-MS analysis of proteins associated with H3K4me1- and H3K4me3-enriched mono-nucleosomes purified from crosslinked IMR-90 cells |
Description | Here we used ChIP-MS to quantitatively profile chromatin-associated proteins that are specifically associated with H3K4me1- and H3K4me3-modified nucleosomes in IMR-90 chromatin. |
HostingRepository | PRIDE |
AnnounceDate | 2024-04-29 |
AnnouncementXML | Submission_2024-04-29_08:01:48.833.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Andrey Tvardovskiy |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive HF |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2023-06-08 10:13:49 | ID requested | |
1 | 2023-12-10 12:20:11 | announced | |
⏵ 2 | 2024-04-29 08:01:49 | announced | 2024-04-29: Updated project metadata. |
Publication List
Lukauskas S, Tvardovskiy A, Nguyen NV, Stadler M, Faull P, Ravnsborg T, Ö, zdemir Aygenli B, Dornauer S, Flynn H, Lindeboom RGH, Barth TK, Brockers K, Hauck SM, Vermeulen M, Snijders AP, M, ü, ller CL, DiMaggio PA, Jensen ON, Schneider R, Bartke T, Decoding chromatin states by proteomic profiling of nucleosome readers. Nature, 627(8004):671-679(2024) [pubmed] |
10.1038/s41586-024-07141-5; |
Keyword List
submitter keyword: H3K4me3,H3K4me1, ChIP-MS |
Contact List
Till Bartke |
contact affiliation | Institute of Functional Epigenetics, Helmholtz Zentrum München, 85764 Neuherberg, Germany |
contact email | till.bartke@helmholtz-muenchen.de |
lab head | |
Andrey Tvardovskiy |
contact affiliation | Institute of Functional Epigenetics, Helmholtz Zentrum München, 85764 Neuherberg, Germany |
contact email | tvardovsky.a@gmail.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/12/PXD042826 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD042826
- Label: PRIDE project
- Name: Quantitative ChIP-MS analysis of proteins associated with H3K4me1- and H3K4me3-enriched mono-nucleosomes purified from crosslinked IMR-90 cells